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Resource: Small RNA expression and miRNA modification dynamics in human oocytes and early embryos
- Pauliina Paloviita,
- Christel Hydén-Granskog,
- Dawit A. Yohannes,
- Priit Paluoja,
- Juha Kere,
- Juha S. Tapanainen,
- Kaarel Krjutškov,
- Timo Tuuri,
- Urmo Võsa,
- and Sanna Vuoristo
Genome Res. August 2021 31: 1474-1485; doi:10.1101/gr.268193.120
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Research: Cotargeting among microRNAs in the brain
- Jennifer M. Cherone,
- Vjola Jorgji,
- and Christopher B. Burge
Genome Res. November 2019 29: 1791-1804; Published in Advance October 24, 2019, doi:10.1101/gr.249201.119
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Research: Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
- Maria Warnefors,
- Katharina Mössinger,
- Jean Halbert,
- Tania Studer,
- John L. VandeBerg,
- Isa Lindgren,
- Amir Fallahshahroudi,
- Per Jensen,
- and Henrik Kaessmann
Genome Res. December 2017 27: 1961-1973; Published in Advance October 27, 2017, doi:10.1101/gr.225391.117
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Method: Degradation dynamics of microRNAs revealed by a novel pulse-chase approach
- Matteo J. Marzi,
- Francesco Ghini,
- Benedetta Cerruti,
- Stefano de Pretis,
- Paola Bonetti,
- Chiara Giacomelli,
- Marcin M. Gorski,
- Theresia Kress,
- Mattia Pelizzola,
- Heiko Muller,
- Bruno Amati,
- and Francesco Nicassio
Genome Res. April 2016 26: 554-565; Published in Advance January 28, 2016, doi:10.1101/gr.198788.115
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LETTER: In-depth characterization of the microRNA transcriptome in a leukemia progression model
- Florian Kuchenbauer,
- Ryan D. Morin,
- Bob Argiropoulos,
- Oleh I. Petriv,
- Malachi Griffith,
- Michael Heuser,
- Eric Yung,
- Jessica Piper,
- Allen Delaney,
- Anna-Liisa Prabhu,
- Yongjun Zhao,
- Helen McDonald,
- Thomas Zeng,
- Martin Hirst,
- Carl L. Hansen,
- Marco A. Marra,
- and R. Keith Humphries
Genome Res. November 2008 18: 1787-1797; Published in Advance October 10, 2008, doi:10.1101/gr.077578.108
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Research: Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
- Stacia K. Wyman,
- Emily C. Knouf,
- Rachael K. Parkin,
- Brian R. Fritz,
- Daniel W. Lin,
- Lucas M. Dennis,
- Michael A. Krouse,
- Philippa J. Webster,
- and Muneesh Tewari
Genome Res. September 2011 21: 1450-1461; Published in Advance August 3, 2011, doi:10.1101/gr.118059.110
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Method: Next-generation sequencing identifies the natural killer cell microRNA transcriptome
- Todd A. Fehniger,
- Todd Wylie,
- Elizabeth Germino,
- Jeffrey W. Leong,
- Vincent J. Magrini,
- Sunita Koul,
- Catherine R. Keppel,
- Stephanie E. Schneider,
- Daniel C. Koboldt,
- Ryan P. Sullivan,
- Michael E. Heinz,
- Seth D. Crosby,
- Rakesh Nagarajan,
- Giridharan Ramsingh,
- Daniel C. Link,
- Timothy J. Ley,
- and Elaine R. Mardis
Genome Res. November 2010 20: 1590-1604; Published in Advance October 8, 2010, doi:10.1101/gr.107995.110
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Methods: Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
- Eugene Berezikov,
- Geert van Tetering,
- Mark Verheul,
- Jose van de Belt,
- Linda van Laake,
- Joost Vos,
- Robert Verloop,
- Marc van de Wetering,
- Victor Guryev,
- Shuji Takada,
- Anton Jan van Zonneveld,
- Hiroyuki Mano,
- Ronald Plasterk,
- and Edwin Cuppen
Genome Res. October 2006 16: 1289-1298; Published in Advance September 5, 2006, doi:10.1101/gr.5159906
.... , Szafranska, A.E. , Labourier, E. , et al. ( 2006 ) The colorectal microRNAome . Proc. Natl. Acad. Sci. 103 : 3687 – 3692 . Du, T. , Zamore, P.D. ( 2005 ) microPrimerThe biogenesis and function of microRNA . Development 132 : 4645 – 4652 . ↵ Ewing, B. , Hillier, L. , Wendl, M.C. , Green, P. ( 1998 ) Base...
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LETTER: Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5′-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
- Jeffrey G. Reid,
- Ankur K. Nagaraja,
- Francis C. Lynn,
- Rafal B. Drabek,
- Donna M. Muzny,
- Chad A. Shaw,
- Michelle K. Weiss,
- Arash O. Naghavi,
- Mahjabeen Khan,
- Huifeng Zhu,
- Jayantha Tennakoon,
- Gemunu H. Gunaratne,
- David B. Corry,
- Jonathan Miller,
- Michael T. McManus,
- Michael S. German,
- Richard A. Gibbs,
- Martin M. Matzuk,
- and Preethi H. Gunaratne
Genome Res. October 2008 18: 1571-1581; Published in Advance July 9, 2008, doi:10.1101/gr.078246.108
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Methods: Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
- Ryan D. Morin,
- Michael D. O’Connor,
- Malachi Griffith,
- Florian Kuchenbauer,
- Allen Delaney,
- Anna-Liisa Prabhu,
- Yongjun Zhao,
- Helen McDonald,
- Thomas Zeng,
- Martin Hirst,
- Connie J. Eaves,
- and Marco A. Marra
Genome Res. April 2008 18: 610-621; Published in Advance February 19, 2008, doi:10.1101/gr.7179508

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