Searching journal content for articles similar to Maurano et al. 30 (12): 1781.

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  1. ....88 ↵Gonzalez-Reiche AS, Hernandez MM, Sullivan MJ, Ciferri B, Alshammary H, Obla A, Fabre S, Kleiner G, Polanco J, Khan Z, et al. 2020. Introductions and early spread of SARS-CoV-2 in the New York city area. Science 369: 297–301. doi:10.1126/science.abc1917 ↵Grenfell BT, Pybus OG, Gog JR, Wood JLN, Daly JM...
  2. ..., Westby G, Shen G, Feng X, et al. 2020. Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region. Genome Res 30: 1781–1788. doi:10.1101/gr.266676.120 ↵Muth D, Corman VM, Roth H, Binger T, Dijkman R, Gottula LT, Gloza-Rausch F, Balboni A, Battilani M, Rihtarič D, et al...
  3. ...for precise identification of truncated vector sequences. As such, it has proven successful during the recent pandemic, with the high-throughput sequencing of the SARS-CoV-2 viral (Bull et al. 2020; Pater et al. 2021; Barbé et al. 2022). Other long-read approaches such as ONT and PacBio also have...
  4. ...graphics for data analysis. Springer-Verlag, New York. ↵Wyres KL, Lam MMC, Holt KE. 2020. Population genomics of Klebsiella pneumoniae. Nat Rev Microbiol 18: 344–359. doi:10.1038/s41579-019-0315-1 Mara Lohde 1 , Gabriel E. Wagner 2 , Johanna Dabernig-Heinz 2 , Adrian Viehweger 3 , Sascha D. Braun 4 , 5...
  5. ...DNAs during library preparation allows for multiple rounds of terminal adapter and target molecule sequencing.Computational approaches to identify and quantify full-length isoformsDespite the development of experimental approaches to more accurately sequence full-length RNA molecules, there are still...
  6. ...contributed equally to this work. Corresponding authors: oguzhan.begik@crg.eu, eva.novoa@crg.euAbstractIn recent years, nanopore direct RNA sequencing (DRS) became a valuable tool for studying the epitranscriptome, owing to its ability to detect multiple modifications within the same full-length native RNA...
  7. ..., Washington, DC 20560, USA; 13Guttman Community College, New York, NY 10018, USA; 14Department of Microbiology and Biomedical Sciences, Dine College, Tuba City, AZ 86045, USA; 15Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA; 16Department of Biology, Johns Hopkins University, Baltimore, MD...
  8. ..., and the PTM profile of regulatory proteins. To investigate direct DNA–protein interactions, scientists can either isolate a protein of interest and identify all of the DNA sequences capable of binding to it or, conversely, use a DNA sequence of interest to identify proteins that are capable of binding to it...
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  9. ...cells (Jiang et al. 2020; Huang et al. 2021). Our study identified transcription factors that may regulate HIV-1 7 chromatin accessibility and HIV-1-host interactions at the integration site. 8 9 10 DISCUSSIONS 11 Viral infection, such as influenza and SARS-CoV-2, can disrupt chromatin structure...
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  10. ...for the FDR-controlled identification and analysis of rare mutations in MAGs assembled using HiFi reads. We show that deep HiFi sequencing has the potential to reveal and phase tens of thousands of rare mutations in a single MAG, identify hotspots and coldspots of these mutations, and detail MAGs’ growth...
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