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Methods: Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
- Daisuke Komura,
- Fan Shen,
- Shumpei Ishikawa,
- Karen R. Fitch,
- Wenwei Chen,
- Jane Zhang,
- Guoying Liu,
- Sigeo Ihara,
- Hiroshi Nakamura,
- Matthew E. Hurles,
- Charles Lee,
- Stephen W. Scherer,
- Keith W. Jones,
- Michael H. Shapero,
- Jing Huang,
- and Hiroyuki Aburatani
Genome Res. December 2006 16: 1575-1584; Published in Advance November 22, 2006, doi:10.1101/gr.5629106
..., S. , Tsai, Y.-Y. , Fang, J. , Law, J. , Di, X. , Liu, W.-M. , Yang, G. , Liu, G. , et al. ( 2004b ) Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high density oligonucleotide array . Genome Res. 14 : 414 – 425 . ↵ McCarrol, S.A. , Hadnott, T.N. , Perry, G.H. , Sabeti, P...
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METHODS: Rapid Mapping of Zebrafish Mutations With SNPs and Oligonucleotide Microarrays
- Heather L. Stickney,
- Jeremy Schmutz,
- Ian G. Woods,
- Caleb C. Holtzer,
- Mark C. Dickson,
- Peter D. Kelly,
- Richard M. Myers,
- and William S. Talbot
Genome Res. December 1, 2002 12: 1929-1934; doi:10.1101/gr.777302
...) The construction of a first generation single nucleotide polymorphism (SNP) map of the zebrafish genome comprising 2035 SNPs and 178 small insertions/deletions, and (2) the development of a method for mapping mutations in which hundreds of SNPs can be scored in parallel with an oligonucleotide microarray. We have...
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Methods: Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays
- Christopher W. Wong,
- Thomas J. Albert,
- Vinsensius B. Vega,
- Jason E. Norton,
- David J. Cutler,
- Todd A. Richmond,
- Lawrence W. Stanton,
- Edison T. Liu,
- and Lance D. Miller
Genome Res. March 2004 14: 398-405; doi:10.1101/gr.2141004
...., Foy, M., Ewan, M., et al. 2000 . Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18 : 630 –634. ↵ Cutler, D.J., Zwick, M.E., Carrasquillo, M.M., Yohn, C.T., Tobin, K.P., Kashuk, C., Mathews, D.J., Shah, N.A., Eichler, E.E., Warrington, J...
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Methods: Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
- Paul Hardenbol,
- Fuli Yu,
- John Belmont,
- Jennifer MacKenzie,
- Carsten Bruckner,
- Tiffany Brundage,
- Andrew Boudreau,
- Steve Chow,
- Jim Eberle,
- Ayca Erbilgin,
- Mat Falkowski,
- Ron Fitzgerald,
- Sy Ghose,
- Oleg Iartchouk,
- Maneesh Jain,
- George Karlin-Neumann,
- Xiuhua Lu,
- Xin Miao,
- Bridget Moore,
- Martin Moorhead,
- Eugeni Namsaraev,
- Shiran Pasternak,
- Eunice Prakash,
- Karen Tran,
- Zhiyong Wang,
- Hywel B. Jones,
- Ronald W. Davis,
- Thomas D. Willis,
- and Richard A. Gibbs
Genome Res. February 2005 15: 269-275; doi:10.1101/gr.3185605
...( www.hapmap.org ). Each of the four MIP reactions was mixed with 500 ng of genomic DNA. Two-color assay execution After amplification and tag cleavage, the products were hybridized to two GeneChip Tag Arrays: TrueTag 5k or TrueTag 10k (Affymetrix) and stained using a two-color staining kit from ParAllele...
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Methods: Role of Excess Inorganic Pyrophosphate in Primer-Extension Genotyping Assays
- Ming Xiao,
- Angie Phong,
- Kristen L. Lum,
- Richard A. Greene,
- Philip R. Buzby,
- and Pui-Yan Kwok
Genome Res. September 2004 14: 1749-1755; Published in Advance August 12, 2004, doi:10.1101/gr.2833204
.... Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. Genome Res. 14 : 414 -425. ↵ Nazarenko, I., Pires, R., Lowe, B., Obaidy, M., and Rashtchian, A. 2002 . Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent...
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METHODS: SNP Genotyping by Multiplexed Solid-Phase Amplification and Fluorescent Minisequencing
- Michael H. Shapero,
- Kerstin K. Leuther,
- Anhthu Nguyen,
- Melissa Scott,
- and Keith W. Jones
Genome Res. November 1, 2001 11: 1926-1934; Published in Advance October 15, 2001, doi:10.1101/gr.205001
.... Nucleic Acids Res. 19 : 4307 . ↵ Brenner S. , Johnson M. , Bridgham J. , Golda G. , Lloyd D.H. , Johnson D. , Luo S. , McCurdy S. , Foy M. , Ewan M. , et al. ( 2000 ) Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat. Biotechnol. 18 : 630 – 634 . ↵ Broude...
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Methods: A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome
- Hui-Yun Wang,
- Minjie Luo,
- Irina V. Tereshchenko,
- Danielle M. Frikker,
- Xiangfeng Cui,
- James Y. Li,
- Guohong Hu,
- Yi Chu,
- Marco A. Azaro,
- Yong Lin,
- Li Shen,
- Qifeng Yang,
- Manousos E. Kambouris,
- Richeng Gao,
- Weichung Shih,
- and Honghua Li
Genome Res. February 2005 15: 276-283; doi:10.1101/gr.2885205
...: A practical approach. J. Clin. Lab. Anal. 16 : 47 -51. ↵ Matsuzaki, H., Loi, H., Dong, S., Tsai, Y.Y., Fang, J., Law, J., Di, X., Liu, W.M., Yang, G., Liu, G., et al. 2004 . Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. Genome Res. 14 : 414 -425...
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Methods: Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
- Josée Dostie,
- Todd A. Richmond,
- Ramy A. Arnaout,
- Rebecca R. Selzer,
- William L. Lee,
- Tracey A. Honan,
- Eric D. Rubio,
- Anton Krumm,
- Justin Lamb,
- Chad Nusbaum,
- Roland D. Green,
- and Job Dekker
Genome Res. October 2006 16: 1299-1309; Published in Advance September 5, 2006, doi:10.1101/gr.5571506
...Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements Josée Dostie 1 , Todd A. Richmond 2 , Ramy A. Arnaout 3 , 4 , 5 , Rebecca R. Selzer 2 , William L. Lee 3...
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LETTER: Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence–SNP analysis
- Kuniya Abe,
- Hideki Noguchi,
- Keiko Tagawa,
- Misako Yuzuriha,
- Atsushi Toyoda,
- Toshio Kojima,
- Kiyoshi Ezawa,
- Naruya Saitou,
- Masahira Hattori,
- Yoshiyuki Sakaki,
- Kazuo Moriwaki,
- and Toshihiko Shiroishi
Genome Res. December 2004 14: 2439-2447; doi:10.1101/gr.2899304
...., Liu, W.-M., Yang, G., Liu, G., et al. 2004 . Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. Genome Res. 14 : 414 -425. ↵ Miyashita, N. and Moriwaki, K. 1987 . H-2-controlled genetic susceptibility to pulmonary adenomas induced by urethane...
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ERRATUM: Correction for Volume 14, p. 414 Genome Res. July 2004 14: 1444

...genome;14/7/1444 1088-9051 Correction for Volume 14, p. 414 Correction for Volume 14, p. 414 Genome Research 14: 414-425 (2004) Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array Hajime Matsuzaki, Halina Loi, Shoulian Dong, Ya-Yu Tsai, Joy Fang...

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