Searching journal content for articles similar to Matise et al. 17 (12): 1783.

Displaying results 1-10 of 102
For checked items
  1. Research: Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome
    • Harsh G. Shukla,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
    ...@tamu.edu, jje@uci.eduAbstractMany essential functions of organisms are encoded in highly repetitive genomic regions, including histones involved in DNA packaging, centromeres that are core components of chromosome segregation, ribosomal RNA comprising the protein translation machinery, telomeres that ensure...
    OPEN ACCESS ARTICLE
  2. Research: A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
    • Tina T. Hu,
    • Michael B. Eisen,
    • Kevin R. Thornton,
    • and Peter Andolfatto
    Genome Res. January 2013 23: 89-98; Published in Advance August 30, 2012, doi:10.1101/gr.141689.112
    ...A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence Tina T. Hu 1 , 4 , Michael B. Eisen 2 , Kevin R. Thornton 3 and Peter Andolfatto 1 1 Department...
    OPEN ACCESS ARTICLE
  3. Research: Most chromatin interactions are not in linkage disequilibrium
    • Sean Whalen and
    • Katherine S. Pollard
    Genome Res. March 2019 29: 334-343; Published in Advance January 7, 2019, doi:10.1101/gr.238022.118
    ...Francisco, San Francisco, California 94158, USA; 3Chan-Zuckerberg Biohub, San Francisco, California 94158, USA Corresponding author: kpollard@gladstone.ucsf.eduAbstractChromatin interactions and linkage disequilibrium (LD) are both pairwise measurements between genomic loci that show block patterns along...
    OPEN ACCESS ARTICLE
  4. Research: The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome
    • Young-Lim Lee,
    • Aniek C. Bouwman,
    • Chad Harland,
    • Mirte Bosse,
    • Gabriel Costa Monteiro Moreira,
    • Roel F. Veerkamp,
    • Erik Mullaart,
    • Nadine Cambisano,
    • Martien A.M. Groenen,
    • Latifa Karim,
    • Wouter Coppieters,
    • Michel Georges,
    • and Carole Charlier
    Genome Res. September 2023 33: 1455-1464; Published in Advance October 4, 2023, doi:10.1101/gr.277884.123
    ...versa. Using this feature, we minimized the number of animals to be sequenced while increasing the number of independent three-generation pedigrees. Squares and circles mark sires and dams, respectively (first generation). Diamonds mark offspring (second generation) and grand-offspring (third generation...
  5. ARTICLE: A second-generation linkage map of the bovine genome.
    • S M Kappes,
    • J W Keele,
    • R T Stone,
    • R A McGraw,
    • T S Sonstegard,
    • T P Smith,
    • N L Lopez-Corrales,
    • and C W Beattie
    Genome Res. March 1997 7: 235-249; doi:10.1101/gr.7.3.235
    ...A second-generation linkage map of the bovine genome. S M Kappes , J W Keele , R T Stone , R A McGraw , T S Sonstegard , T P Smith , N L Lopez-Corrales , and C W Beattie U.S. Department of Agriculture...
  6. Method: Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR
    • Marta Puig,
    • Jon Lerga-Jaso,
    • Carla Giner-Delgado,
    • Sarai Pacheco,
    • David Izquierdo,
    • Alejandra Delprat,
    • Magdalena Gayà-Vidal,
    • Jack F. Regan,
    • George Karlin-Neumann,
    • and Mario Cáceres
    Genome Res. May 2020 30: 724-735; Published in Advance May 18, 2020, doi:10.1101/gr.255273.119
    ...of kilobases long. Therefore, short second-generation sequencing reads (∼100–150 bp) (Sudmant et al. 2015; Hehir-Kwa et al. 2016; Collins et al. 2019), and even longer reads from single-molecule sequencing technologies (∼10–20 kb) (Huddleston et al. 2017; Shao et al. 2018; Audano et al. 2019) or paired...
    OPEN ACCESS ARTICLE
  7. Resource: Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions
    • Rodrigo P. Baptista,
    • Yiran Li,
    • Adam Sateriale,
    • Mandy J. Sanders,
    • Karen L. Brooks,
    • Alan Tracey,
    • Brendan R.E. Ansell,
    • Aaron R. Jex,
    • Garrett W. Cooper,
    • Ethan D. Smith,
    • Rui Xiao,
    • Jennifer E. Dumaine,
    • Peter Georgeson,
    • Bernard J. Pope,
    • Matthew Berriman,
    • Boris Striepen,
    • James A. Cotton,
    • and Jessica C. Kissinger
    Genome Res. January 2022 32: 203-213; Published in Advance November 11, 2021, doi:10.1101/gr.275325.121
    ..., (CpIRef), was assembled with a limited physical map (Abrahamsen et al. 2004) and a few hundred ESTs for training gene finders. Genomic, transcriptomic, and proteomic work has been lacking owing to the obligate quasi-intracellular nature of portions of the parasite's life cycle, the historical lack...
    OPEN ACCESS ARTICLE
  8. Research: Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control
    • Todd P. Michael,
    • Evan Ernst,
    • Nolan Hartwick,
    • Philomena Chu,
    • Douglas Bryant,
    • Sarah Gilbert,
    • Stefan Ortleb,
    • Erin L. Baggs,
    • K. Sowjanya Sree,
    • Klaus J. Appenroth,
    • Joerg Fuchs,
    • Florian Jupe,
    • Justin P. Sandoval,
    • Ksenia V. Krasileva,
    • Ljudmylla Borisjuk,
    • Todd C. Mockler,
    • Joseph R. Ecker,
    • Robert A. Martienssen,
    • and Eric Lam
    Genome Res. February 2021 31: 225-238; Published in Advance December 23, 2020, doi:10.1101/gr.266429.120
    ...possibly reflecting missing high copy number repeat sequence (centromeres) in our assemblies (Supplemental Table S3; Supplemental Materials).View this table: In this window In a new window Table 1. Genome assembly statisticsWe checked the completeness of these assemblies by mapping 1780 high confidence...
    OPEN ACCESS ARTICLE
  9. Methods: Genome-wide comparisons of variation in linkage disequilibrium
    • Yik Y. Teo,
    • Andrew E. Fry,
    • Kanishka Bhattacharya,
    • Kerrin S. Small,
    • Dominic P. Kwiatkowski,
    • and Taane G. Clark
    Genome Res. October 2009 19: 1849-1860; Published in Advance June 18, 2009, doi:10.1101/gr.092189.109
    ...Genome-wide comparisons of variation in linkage disequilibrium Yik Y. Teo 1 , 3 , Andrew E. Fry 1 , Kanishka Bhattacharya 1 , Kerrin S. Small 1 , Dominic P. Kwiatkowski 1 , 2 and Taane G. Clark 1 , 2 1 Wellcome...
  10. Resource: A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
    • Martien A.M. Groenen,
    • Per Wahlberg,
    • Mario Foglio,
    • Hans H. Cheng,
    • Hendrik-Jan Megens,
    • Richard P.M.A. Crooijmans,
    • Francois Besnier,
    • Mark Lathrop,
    • William M. Muir,
    • Gane Ka-Shu Wong,
    • Ivo Gut,
    • and Leif Andersson
    Genome Res. March 2009 19: 510-519; Published in Advance December 16, 2008, doi:10.1101/gr.086538.108
    ...decade, culminating in the publication of a draft sequence of the chicken ( Hillier et al. 2004 ). Despite the availability of a high-quality sequence and detailed physical maps ( Wallis et al. 2004 ), high-resolution linkage maps continue to be critical for the identification of genomic regions...
For checked items

Search Results

Next 10 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research