Searching journal content for articles similar to Martinez et al. 18 (12): 2005.

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  1. Research: Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans
    • Deni Subasic,
    • Anneke Brümmer,
    • Yibo Wu,
    • Sérgio Morgado Pinto,
    • Jochen Imig,
    • Martin Keller,
    • Marko Jovanovic,
    • Helen Louise Lightfoot,
    • Sara Nasso,
    • Sandra Goetze,
    • Erich Brunner,
    • Jonathan Hall,
    • Ruedi Aebersold,
    • Mihaela Zavolan,
    • and Michael O. Hengartner
    Genome Res. November 2015 25: 1680-1691; Published in Advance July 31, 2015, doi:10.1101/gr.183160.114
    ...Institute of Pharmaceutical Chemistry, Swiss Federal Institute of Technology, 8093 Zurich, Switzerland; 8Faculty of Science, University of Zurich, 8057 Zurich, Switzerland In animals, microRNAs frequently form families with related sequences. The functional relevance ofmiRNA families and the relative...
  2. Research: Complex expression dynamics and robustness in C. elegans insulin networks
    • Ashlyn D. Ritter,
    • Yuan Shen,
    • Juan Fuxman Bass,
    • Sankarganesh Jeyaraj,
    • Bart Deplancke,
    • Arnab Mukhopadhyay,
    • Jian Xu,
    • Monica Driscoll,
    • Heidi A. Tissenbaum,
    • and Albertha J.M. Walhout
    Genome Res. June 2013 23: 954-965; Published in Advance March 28, 2013, doi:10.1101/gr.150466.112
    ...functions is often maintained. Here, we use the family of 40 Caenorhabditis elegans insulins to gain insight into the balance between specificity and redundancy. The insulin/insulin-like growth factor (IIS) pathway comprises a single receptor, DAF-2. To date, no single insulin-like peptide recapitulates...
  3. Research: Multidimensional regulation of gene expression in the C. elegans embryo
    • John Isaac Murray,
    • Thomas J. Boyle,
    • Elicia Preston,
    • Dionne Vafeados,
    • Barbara Mericle,
    • Peter Weisdepp,
    • Zhongying Zhao,
    • Zhirong Bao,
    • Max Boeck,
    • and Robert H. Waterston
    Genome Res. July 2012 22: 1282-1294; Published in Advance April 16, 2012, doi:10.1101/gr.131920.111
    ...(albeitwithout thequantification anddynamics facilitated by our automated methodology). Other large-scale studies include a collection of 366 transcription-factor promoter::GFP reporters (Reece-Hoyes et al. 2007), and of 73 microRNA promoter::GFP reporters (Martinez et al. 2008). Each of these studies generated...
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  4. Resource: A spatial and temporal map of C. elegans gene expression
    • W. Clay Spencer,
    • Georg Zeller,
    • Joseph D. Watson,
    • Stefan R. Henz,
    • Kathie L. Watkins,
    • Rebecca D. McWhirter,
    • Sarah Petersen,
    • Vipin T. Sreedharan,
    • Christian Widmer,
    • Jeanyoung Jo,
    • Valerie Reinke,
    • Lisa Petrella,
    • Susan Strome,
    • Stephen E. Von Stetina,
    • Menachem Katz,
    • Shai Shaham,
    • Gunnar Rätsch,
    • and David M. Miller III
    Genome Res. February 2011 21: 325-341; Published in Advance December 22, 2010, doi:10.1101/gr.114595.110
    ...slightly smaller than that of humans (http://www.sanger.ac.uk/PostGenomics/encode/ stats.html). Major classes of noncoding RNAs (ncRNAs) such as microRNAs (miRNAs) are also represented in C. elegans (Ruby et al. 2006; Kato et al. 2009). Thus, C. elegans provides a simple but representative model...
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  5. Research: Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    • Jianbin Wang,
    • Benjamin Czech,
    • Amanda Crunk,
    • Adam Wallace,
    • Makedonka Mitreva,
    • Gregory J. Hannon,
    • and Richard E. Davis
    Genome Res. September 2011 21: 1462-1477; Published in Advance June 17, 2011, doi:10.1101/gr.121426.111
    ...-siRNAs) and Piwi-interacting RNAs (piRNAs) mainly control gene and transposon expression in the germline, while microRNAs (miRNAs) generally function in post-transcriptional gene silencing in both somatic and germline cells. To provide an evolutionary and developmental perspective on small RNA pathways...
  6. Letter: Repertoire and evolution of miRNA genes in four divergent nematode species
    • Elzo de Wit,
    • Sam E.V. Linsen,
    • Edwin Cuppen,
    • and Eugene Berezikov
    Genome Res. November 2009 19: 2064-2074; Published in Advance September 15, 2009, doi:10.1101/gr.093781.109
    ...-transcriptional regulation. We have performed small RNA sequencing in the nematodes Caenorhabditis elegans , C. briggsae , C. remanei , and Pristionchus pacificus , which have diverged up to 400 million years ago, to establish the repertoire and evolutionary dynamics of miRNAs in these species. In addition to previously...
  7. REVIEW: Unraveling transcription regulatory networks by protein–DNA and protein–protein interaction mapping
    • Albertha J.M. Walhout
    Genome Res. December 2006 16: 1445-1454; Published in Advance October 19, 2006, doi:10.1101/gr.5321506
    ...by both RNA binding proteins and microRNAs ( Fig. 2E ). Such networks need themselves to be integrated with spatio-temporal information about gene expression and TF/microRNA activity and with phenotypes conferred by TFs and microRNAs to obtain a comprehensive picture about regulatory networks and how...
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