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Research: A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
- Alexandros Bousios,
- Concepcion M. Diez,
- Shohei Takuno,
- Vojtech Bystry,
- Nikos Darzentas,
- and Brandon S. Gaut
Genome Res. February 2016 26: 226-237; Published in Advance December 2, 2015, doi:10.1101/gr.193763.115
...different TE orders (Wang et al. 2009; Feng et al. 2010; Zemach et al. 2013). Although informative, these approaches often have low resolution and may not assess how siRNA and methylation levels change as a function of the age of element insertion. Higher resolution work requires the careful annotation...
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Resource: Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants
- Alice Lunardon,
- Nathan R. Johnson,
- Emily Hagerott,
- Tamia Phifer,
- Seth Polydore,
- Ceyda Coruh,
- and Michael J. Axtell
Genome Res. March 2020 30: 497-513; Published in Advance March 16, 2020, doi:10.1101/gr.256750.119
...We gathered sRNA-seq libraries from each (Fig. 1A). In most cases, these data were from public sequencing archives (Supplemental Table S1). In a few cases, we also generated novel sRNA-seq libraries (Zea mays, Spinacia oleracea, Daucus carota, Theobroma cacao) (Supplemental Table S1). We sought to annotate...

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