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RESOURCE: The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
- Jetty S.S. Ammiraju,
- Meizhong Luo,
- José L. Goicoechea,
- Wenming Wang,
- Dave Kudrna,
- Christopher Mueller,
- Jayson Talag,
- HyeRan Kim,
- Nicholas B. Sisneros,
- Barbara Blackmon,
- Eric Fang,
- Jeffery B. Tomkins,
- Darshan Brar,
- David MacKill,
- Susan McCouch,
- Nori Kurata,
- Georgina Lambert,
- David W. Galbraith,
- K. Arumuganathan,
- Kiran Rao,
- Jason G. Walling,
- Navdeep Gill,
- Yeisoo Yu,
- Phillip SanMiguel,
- Carol Soderlund,
- Scott Jackson,
- and Rod A. Wing
Genome Res. January 2006 16: 140-147; Published in Advance December 12, 2005, doi:10.1101/gr.3766306
...The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza Jetty S.S. Ammiraju 1 , 3 , 12 , Meizhong Luo 1 , 3 , 12 , José L...
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Methods: Accurate and reliable high-throughput detection of copy number variation in the human genome
- Heike Fiegler,
- Richard Redon,
- Dan Andrews,
- Carol Scott,
- Robert Andrews,
- Carol Carder,
- Richard Clark,
- Oliver Dovey,
- Peter Ellis,
- Lars Feuk,
- Lisa French,
- Paul Hunt,
- Dimitrios Kalaitzopoulos,
- James Larkin,
- Lyndal Montgomery,
- George H. Perry,
- Bob W. Plumb,
- Keith Porter,
- Rachel E. Rigby,
- Diane Rigler,
- Armand Valsesia,
- Cordelia Langford,
- Sean J. Humphray,
- Stephen W. Scherer,
- Charles Lee,
- Matthew E. Hurles,
- and Nigel P. Carter
Genome Res. December 2006 16: 1566-1574; Published in Advance November 22, 2006, doi:10.1101/gr.5630906
...) High throughput fingerprint analysis of large-insert clones . Genome Res. 7 : 1072 – 1084 . ↵ Newman, T.L. , Tuzun, E. , Morrison, V.A. , Hayden, K.E. , Ventura, M. , McGrath, S.D. , Rocchi, M. , Eichler, E.E. ( 2005 ) A -wide survey of structural variation between human and chimpanzee . Genome Res. 15...
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RESOURCE: Internet Contig Explorer (iCE)—A Tool for Visualizing Clone Fingerprint Maps
- Christopher D. Fjell,
- Ian Bosdet,
- Jacqueline E. Schein,
- Steven J.M. Jones,
- and Marco A. Marra
Genome Res. June 2003 13: 1244-1249; doi:10.1101/gr.819303
....M., Hillier, L.W., McPherson, J.D., and Waterston, R.H. 1997 . High-throughput fingerprint analysis of large-insert clones. Genome Res. 7 : 1072 –1084. ↵ Marra, M.A., Kucaba, T., Sekhon, M., Hillier, L., Martienssen, R., Chinwalla, A., Crockett, J., Fedele, J., Grover, H., Gund, C. et al. 1999 . A map...
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Methods: Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
- Ágnes Baross,
- Yaron S.N. Butterfield,
- Shaun M. Coughlin,
- Thomas Zeng,
- Malachi Griffith,
- Obi L. Griffith,
- Anca S. Petrescu,
- Duane E. Smailus,
- Jaswinder Khattra,
- Helen L. McDonald,
- Sheldon J. McKay,
- Michelle Moksa,
- Robert A. Holt,
- and Marco A. Marra
Genome Res. October 15, 2004 14: 2083-2092; doi:10.1101/gr.2473704
.... ↵ Marra, M.A., Kucaba, T.A., Dietrich, N.L., Green, E.D., Brownstein, B., Wilson, R.K., McDonald, K.M., Hillier, L.W., McPherson, J.D., and Waterston, R.H. 1997 . High throughput fingerprint analysis of large-insert clones. Genome Res. 7 : 1072 -1084. ↵ Rozen, S. and Skaletsky, H. 2000 . Primer3...
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METHODS: Optical Mapping of BAC Clones from the Human Y Chromosome DAZ Locus
- Joseph Giacalone,
- Stephanie Delobette,
- Veronica Gibaja,
- Lei Ni,
- Yiannis Skiadas,
- Rong Qi,
- Joanne Edington,
- Zhongwu Lai,
- Damara Gebauer,
- Hongjuan Zhao,
- Thomas Anantharaman,
- Bhubaneswar Mishra,
- Laura G. Brown,
- Richa Saxena,
- David C. Page,
- and David C. Schwartz
Genome Res. September 1, 2000 10: 1421-1429; doi:10.1101/gr.112100
...encountered in working with BAC clones as compared with cosmid clones ( Anantharaman et al. 1997 ; Jing et al. 1998 ). Algorithms were constructed that modeled errors unique to large insert clones; these included increased DNA breakage and an increased number of small DNA map fragments (see Advancements...
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RESOURCE: A Resource of Mapped Human Bacterial Artificial Chromosome Clones
- Vivian G. Cheung,
- Heather L. Dalrymple,
- Sandya Narasimhan,
- Jason Watts,
- Gregory Schuler,
- Anton K. Raap,
- Michael Morley,
- and Alan Bruzel
Genome Res. October 1, 1999 9: 989-993; doi:10.1101/gr.9.10.989
...://genomics.med.upenn.edu/genmapdb), that contains information about each clone in our collection. The goal of this project is to provide a collection of large-insert clones that are anchored to STS markers. The great success of the human project has provided high-quality BAC libraries, dense maps of genetic markers, sequences, and high throughput...
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RESEARCH: Analysis of the 1.1-Mb Human α/δ T-Cell Receptor Locus with Bacterial Artificial Chromosome Clones
- Cecilie Boysen,
- Melvin I. Simon,
- and Leroy Hood
Genome Res. April 1, 1997 7: 330-338; doi:10.1101/gr.7.4.330
...ranging in size from 86 to 208 kb. Furthermore, the 208-kb BAC129 clone has significant -wide and locus-specific repeats, yet we were able to sequence this large insert without difficulty. The shotgun clone coverage is distributed quite evenly, suggesting that BAC clones can be sheared randomly...
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LETTER: A High-throughput AFLP-based Method for Constructing Integrated Genetic and Physical Maps: Progress Toward a Sorghum Genome Map
- Patricia E. Klein,
- Robert R. Klein,
- Samuel W. Cartinhour,
- Paul E. Ulanch,
- Jianmin Dong,
- Jacque A. Obert,
- Daryl T. Morishige,
- Shannon D. Schlueter,
- Kevin L. Childs,
- Melissa Ale,
- and John E. Mullet
Genome Res. June 1, 2000 10: 789-807; doi:10.1101/gr.10.6.789
...of the sorghum genome (750 Mbp) is a primary goal of our sorghum genome project. To help accomplish this task, we have developed a new high-throughput PCR-based method for building BAC contigs and locating BAC clones on the sorghum genetic map. This task involved pooling 24,576 sorghum BAC clones (∼4× genome...
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LETTER: Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery
- Daniel G. Peterson,
- Stefan R. Schulze,
- Erica B. Sciara,
- Scott A. Lee,
- John E. Bowers,
- Alexander Nagel,
- Ning Jiang,
- Deanne C. Tibbitts,
- Susan R. Wessler,
- and Andrew H. Paterson
Genome Res. May 1, 2002 12: 795-807; Published in Advance April 12, 2002, doi:10.1101/gr.226102
...Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery Daniel G. Peterson 1 , 4 , Stefan R. Schulze 1 , 3 , Erica B. Sciara 1 , 3 , Scott A. Lee 1 , John E. Bowers 1...
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LETTER: A Contiguous 3-Mb Sequence-Ready Map in the S3–MX Region on 21q22.2 Based on High- Throughput Nonisotopic Library Screenings
- Thomas Hildmann,
- Xianging Kong,
- John O’Brien,
- Lisa Riesselman,
- Hoang-My Christensen,
- Emilie Dagand,
- Hans Lehrach,
- and Marie-Laure Yaspo
Genome Res. April 1, 1999 9: 360-372; doi:10.1101/gr.9.4.360
....A. , Dietrich N.L. , Green E.D. , Browstein B. , Wilson R.K. , Mc Donald K.M. , LaDeana W.H. , McPherson J.D. , Waterston R.H. ( 1997 ) High thoughput fingerprinting analysis of large-insert clones. Genome Res. 7 : 1072 – 1084 . ↵ Mott R. , Grigoriev A. , Maier E. , Hoheisel J. , Lehrach H. ( 1993 ) Algorithms...

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