Searching journal content for articles similar to Marra et al. 6 (11): 1118.

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  1. Research: Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells
    • Young Seok Ju,
    • Jose M.C. Tubio,
    • William Mifsud,
    • Beiyuan Fu,
    • Helen R. Davies,
    • Manasa Ramakrishna,
    • Yilong Li,
    • Lucy Yates,
    • Gunes Gundem,
    • Patrick S. Tarpey,
    • Sam Behjati,
    • Elli Papaemmanuil,
    • Sancha Martin,
    • Anthony Fullam,
    • Moritz Gerstung,
    • ICGC Prostate Cancer Working Group,
    • ICGC Bone Cancer Working Group,
    • ICGC Breast Cancer Working Group,
    • Jyoti Nangalia,
    • Anthony R. Green,
    • Carlos Caldas,
    • Åke Borg,
    • Andrew Tutt,
    • Ming Ta Michael Lee,
    • Laura J. van't Veer,
    • Benita K.T. Tan,
    • Samuel Aparicio,
    • Paul N. Span,
    • John W.M. Martens,
    • Stian Knappskog,
    • Anne Vincent-Salomon,
    • Anne-Lise Børresen-Dale,
    • Jórunn Erla Eyfjörd,
    • Ola Myklebost,
    • Adrienne M. Flanagan,
    • Christopher Foster,
    • David E. Neal,
    • Colin Cooper,
    • Rosalind Eeles,
    • G. Steven Bova,
    • Sunil R. Lakhani,
    • Christine Desmedt,
    • Gilles Thomas,
    • Andrea L. Richardson,
    • Colin A. Purdie,
    • Alastair M. Thompson,
    • Ultan McDermott,
    • Fengtang Yang,
    • Serena Nik-Zainal,
    • Peter J. Campbell,
    • and Michael R. Stratton
    Genome Res. June 2015 25: 814-824; Published in Advance May 11, 2015, doi:10.1101/gr.190470.115
    ...ancestral cancer clone or in normal somatic cells prior to neoplastic change. Nuclear transfer of mtDNA is unexpectedly frequent in human somatic cells To obtain a perspective on the frequency ofmitochondrial-nuclear DNA translocation, we compared its rate to that of intranuclear 0 20 40 60 80 10 240 100...
    OPEN ACCESS ARTICLE
  2. LETTER: High Throughput Fingerprint Analysis of Large-Insert Clones
    • Marco A. Marra,
    • Tamara A. Kucaba,
    • Nicole L. Dietrich,
    • Eric D. Green,
    • Buddy Brownstein,
    • Richard K. Wilson,
    • Ken M. McDonald,
    • LaDeana W. Hillier,
    • John D. McPherson,
    • and Robert H. Waterston
    Genome Res. November 1, 1997 7: 1072-1084; doi:10.1101/gr.7.11.1072
    ...High Throughput Fingerprint Analysis of Large-Insert Clones Marco A. Marra 1 , 5 , Tamara A. Kucaba 1 , Nicole L. Dietrich 1 , Eric D. Green 2 , Buddy Brownstein 4 , Richard K. Wilson 1 , 3 , Ken M. McDonald 1 , 3...
  3. ARTICLE: Mapping the human Y chromosome by fingerprinting cosmid clones.
    • K Taylor,
    • N Hornigold,
    • D Conway,
    • D Williams,
    • Z Ulinowski,
    • M Agochiya,
    • P Fattorini,
    • P de Jong,
    • P F Little,
    • and J Wolfe
    Genome Res. April 1996 6: 235-248; doi:10.1101/gr.6.4.235
    ...Mapping the human Y chromosome by fingerprinting cosmid clones. K Taylor , N Hornigold , D Conway , D Williams , Z Ulinowski , M Agochiya , P Fattorini , P de Jong , P F Little , and J Wolfe...
  4. RESEARCH: Analysis of the 1.1-Mb Human α/δ T-Cell Receptor Locus with Bacterial Artificial Chromosome Clones
    • Cecilie Boysen,
    • Melvin I. Simon,
    • and Leroy Hood
    Genome Res. April 1, 1997 7: 330-338; doi:10.1101/gr.7.4.330
    ...with BAC clones. Seventeen BAC clones covered the 1.1-Mb α/δ locus, with the exception of one small gap that was expected from the coverage that a 3.7-fold BAC library is likely to provide. The end sequences of the BAC inserts could be obtained directly from the BAC DNA by sequencing with the chain...
  5. ARTICLE: Chromosomal localization and expressed sequence tag generation of clones from a normalized human adult thymus cDNA library.
    • J E Lamerdin,
    • R S Athwal,
    • M S Kansara,
    • A K Sandhu,
    • S R Patanjali,
    • S M Weissman,
    • and A V Carrano
    Genome Res. November 1995 5: 359-367; doi:10.1101/gr.5.4.359
    ...sequence tags) from a directionally cloned human infant brain cDNA library. Nature Genet. 4: 373 – 380. Athwal, R.S., Smarsh, M. Searle, B.M. and Deo. S.S. 1985. Integration of a dominant selectable marker into human chromosomes and transfer of marked chromosomes to mouse cells by microcell fusion. Somat...
  6. ARTICLES: Use of a fluorescent-PCR reaction to detect genomic sequence copy number and transcriptional abundance.
    • P W Chiang,
    • W J Song,
    • K Y Wu,
    • J R Korenberg,
    • E J Fogel,
    • M L Van Keuren,
    • D Lashkari,
    • and D M Kurnit
    Genome Res. October 1996 6: 1013-1026; doi:10.1101/gr.6.10.1013
    .... No PCR Energy transfer-~ fluorescence + the ethidium bromide-gel-based assay by at least fourfold. F primer 1 primer 2 PCR No energy transfer--~ fluorescence - primer 2 F primer 1 Figure 2 Schematic representation of energy transfer of the Ampli- Sensor in PCR. Primer 2 is the excess primer in the first...
  7. Research: Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
    • Shuhei Mitsutomi,
    • Anzu Sugawara,
    • Masahide Seki,
    • Yutaka Suzuki,
    • Sotaro Miyao,
    • Haozhe Du,
    • Kenji Takahashi,
    • Yusuke Mizukami,
    • Kenzui Taniue,
    • and Nobuyoshi Akimitsu
    Genome Res. November 2025 35: 2406-2417; Published in Advance October 30, 2025, doi:10.1101/gr.280269.124
    ...% FBS and 1 mM sodium pyruvate.Molecular cloningThe construct for expressing FLAG-tagged METTL2A (pcDNA3.1-FLAG-METTL2A) was generated by amplifying the open reading frame (ORF) of METTL2A from AsPC-1 cell cDNA using PrimeSTAR GXL DNA Polymerase (Takara, #R050A) and inserting it into the EcoRV and Xho...
  8. RESOURCE: Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis
    • Kazutoyo Osoegawa,
    • Minako Tateno,
    • Peng Yeong Woon,
    • Eirik Frengen,
    • Aaron G. Mammoser,
    • Joseph J. Catanese,
    • Yoshihide Hayashizaki,
    • and Pieter J. de Jong
    Genome Res. January 1, 2000 10: 116-128; doi:10.1101/gr.10.1.116
    ...functional gene studies. For genome mapping and sequencing, we prepared BAC libraries from the 129S6/SvEvTac and the C57BL/6J strains. The average insert sizes for the three libraries range between 130 kb and 200 kb. Based on the numbers of clones and the observed average insert sizes, we estimate each...
  9. METHODS: Evaluation of Single Nucleotide Polymorphism Typing with Invader on PCR Amplicons and Its Automation
    • Charles A. Mein,
    • Bryan J. Barratt,
    • Michael G. Dunn,
    • Thorsten Siegmund,
    • Annabel N. Smith,
    • Laura Esposito,
    • Sarah Nutland,
    • Helen E. Stevens,
    • Amanda J. Wilson,
    • Michael S. Phillips,
    • Nancy Jarvis,
    • Scott Law,
    • Monika de Arruda,
    • and John A. Todd
    Genome Res. March 1, 2000 10: 330-343; doi:10.1101/gr.10.3.330
    ...in a genotyping laboratory and tested its automation. The Invader technology uses a Flap Endonuclease for allele discrimination and a universal fluorescence resonance energy transfer (FRET) reporter system. Three hundred and eighty-four individuals were genotyped across a panel of 36 SNPs and one insertion...
  10. Method: Transcript amplification from single bacterium for transcriptome analysis
    • Yun Kang,
    • Michael H. Norris,
    • Jan Zarzycki-Siek,
    • William C. Nierman,
    • Stuart P. Donachie,
    • and Tung T. Hoang
    Genome Res. June 2011 21: 925-935; Published in Advance May 2, 2011, doi:10.1101/gr.116103.110
    ...) Bright-field mode showing the section of the membrane where the single bacterium had been. (E ) Fluorescence mode confirming that the bacterium of interest has been transferred from the membrane slide to the PCR tube lid. 926 Genome Research www..org Kang et al. B. thailandensis cellswere isolated (Fig...
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