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ARTICLE: A comparative transcription map of the murine bare patches (Bpa) and striated (Str) critical regions and human Xq28.
- M L Levin,
- A Chatterjee,
- A Pragliola,
- K C Worley,
- M Wehnert,
- O Zhuchenko,
- R F Smith,
- C C Lee,
- and G E Herman
Genome Res. June 1996 6: 465-477; doi:10.1101/gr.6.6.465
...DNAs determined to be present in both human and mouse. Three of the murine transcripts appear to be present in multiple copies within the Bpa/Str critical region and could be associated with a predisposition to genomic rearrangements. Reverse transcriptase PCR (RT-PCR) and Northern analysis demonstrate...
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LETTER: Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis
- Mulu Ayele,
- Brian J. Haas,
- Nikhil Kumar,
- Hank Wu,
- Yongli Xiao,
- Susan Van Aken,
- Teresa R. Utterback,
- Jennifer R. Wortman,
- Owen R. White,
- and Christopher D. Town
Genome Res. April 2005 15: 487-495; doi:10.1101/gr.3176505
..., R., Gloeckner, G., Botcherby, M.R.M., Nordsiek, G., Strivens, M.A., Kioschis, P., Dangel, A., Cunningham, D., et al. 2000 . Comparative sequence analysis of the Bpa/Str region in mouse and man. Genome Res. 10 : 758 -775. ↵ Meyers, B.C., Vu, T.H., Tej, S.S., Ghazal, H., Matvienko, M., Agrawal, V...
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LETTER: Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse
- Ann-Marie Mallon,
- Laurens Wilming,
- Joseph Weekes,
- James G.R. Gilbert,
- Jennifer Ashurst,
- Sandrine Peyrefitte,
- Lucy Matthews,
- Matthew Cadman,
- Richard McKeone,
- Chris A. Sellick,
- Ruth Arkell,
- Marc R.M. Botcherby,
- Mark A. Strivens,
- R. Duncan Campbell,
- Simon Gregory,
- Paul Denny,
- John M. Hancock,
- Jane Rogers,
- and Steve D.M. Brown
Genome Res. October 2004 14: 1888-1901; Published in Advance September 13, 2004, doi:10.1101/gr.2478604
...previously demonstrated the utility of using short (50 bp) regions of interspecies conservation (Evolutionarily Conserved Regions; ECRs) to identify candidate transcriptional units in the Bpa / Str region of the mouse X chromosome ( Mallon et al. 2000 ). Dermitzakis et al. ( 2002 ) described an analysis...
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LETTER: Comparative Genomic Sequence Analysis of the Human Chromosome 21 Down Syndrome Critical Region
- Atsushi Toyoda,
- Hideki Noguchi,
- Todd D. Taylor,
- Takehiko Ito,
- Mathew T. Pletcher,
- Yoshiyuki Sakaki,
- Roger H. Reeves,
- and Masahira Hattori
Genome Res. September 1, 2002 12: 1323-1332; doi:10.1101/gr.153702
.... , Dangel A. , Cunningham D. , et al. ( 2000 ) Comparative sequence analysis of the Bpa/Str region in mouse and man. Genome Res. 10 : 758 – 775 . ↵ Martindale D.W. , Wilson M.D. , Wang D. , Burke R.D. , Chen X. , Duronio V. , Koop B.F. ( 2000 ) Comparative genomic sequence analysis of the Williams syndrome...
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LETTER: Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine
- Corinne Chureau,
- Marine Prissette,
- Agnès Bourdet,
- Valérie Barbe,
- Laurence Cattolico,
- Louis Jones,
- André Eggen,
- Philip Avner,
- and Laurent Duret
Genome Res. June 1, 2002 12: 894-908; Published in Advance November 21, 2000, doi:10.1101/gr.152902
..., including the Xist gene. These comparisons have revealed conserved genes, both coding and noncoding, conserved CpG islands and, more surprisingly, conserved pseudogenes. The distribution of repeated elements, especially LINE repeats, in the mouse Xic region when compared to the rest of the genome does...
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REPORT: Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome
- Udaya DeSilva,
- Laura Elnitski,
- Jacquelyn R. Idol,
- Johannah L. Doyle,
- Weiniu Gan,
- James W. Thomas,
- Scott Schwartz,
- Nicole L. Dietrich,
- Stephen M. Beckstrom-Sternberg,
- Jennifer C. McDowell,
- Robert W. Blakesley,
- Gerard G. Bouffard,
- Pamela J. Thomas,
- Jeffrey W. Touchman,
- Webb Miller,
- and Eric D. Green
Genome Res. January 1, 2002 12: 3-15; doi:10.1101/gr.214802
...sequence. Notable examples of large (e.g., &gt;300 kb) blocks of generated mouse sequence include that from the velocardiofacial syndrome region (∼634 kb; Lund et al. 2000 ), the Cftr region (∼358 kb; Ellsworth et al. 2000 ), the Bpa / Str region (∼430 kb; Mallon et al. 2000 ), the region on chromosome 7...
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LETTER: Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence
- Tatyana B. Nesterova,
- Sergey Ya. Slobodyanyuk,
- Eugene A. Elisaphenko,
- Alexander I. Shevchenko,
- Colette Johnston,
- Marina E. Pavlova,
- Igor B. Rogozin,
- Nikolay N. Kolesnikov,
- Neil Brockdorff,
- and Suren M. Zakian
Genome Res. May 1, 2001 11: 833-849; doi:10.1101/gr.174901
...clusters ( Mallon et al. 2000 ). In contrast, the X chromosome is especially enriched for LINE elements ( Boyle et al. 1990 ; Bailey et al. 2000 ), as illustrated by the X-linked region Bpa/Str , in which LINEs occur with significantly higher frequency than SINEs both in mouse and human ( Mallon et al...
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LETTER: Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
- Qiang Wu,
- Theresa Zhang,
- Jan-Fang Cheng,
- Youngwook Kim,
- Jane Grimwood,
- Jeremy Schmutz,
- Mark Dickson,
- James P. Noonan,
- Michael Q. Zhang,
- Richard M. Myers,
- and Tom Maniatis
Genome Res. March 1, 2001 11: 389-404; doi:10.1101/gr.167301
...(LINEs), in contrast to almost equal numbers of SINEs and LINEs in the human β T-cell receptor locus ( Rowen et al. 1996 ) and the Bpa/Str region ( Mallon et al. 2000 ). Interestingly, most of the variable region 5′ splice sites are immediately followed by repeat sequences. Remarkably, the large regions...
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REVIEW: A Phenotype Map of the Mouse X Chromosome: Models for Human X-linked Disease
- Yvonne Boyd,
- Helen J. Blair,
- Pamela Cunliffe,
- Walter K. Masson,
- and Vivienne Reed
Genome Res. March 1, 2000 10: 277-292; doi:10.1101/gr.10.3.277
.....org Table 1. List of X-Linked Genes and Conserved Sequences A Phenotype Map of the Mouse X Chromosome Genome Research 279 www..org Table 1. (Continued) Included are only those loci that have been regionally mapped on both the human and mouse X chromosomes with sufficient resolution to contribute to the man...
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LETTER: Human and Mouse α-Synuclein Genes: Comparative Genomic Sequence Analysis and Identification of a Novel Gene Regulatory Element
- Jeffrey W. Touchman,
- Anindya Dehejia,
- Ornit Chiba-Falek,
- Deborah E. Cabin,
- Jody R. Schwartz,
- Bonnie M. Orrison,
- Mihael H. Polymeropoulos,
- and Robert L. Nussbaum
Genome Res. January 1, 2001 11: 78-86; doi:10.1101/gr.165801
...-length mRNA and protein sequences. Genome Res. 6 : 846 – 857 . ↵ Mallon A. , Platzer M. , Bate R. , Gloeckner G. , Botcherby M.R. , Nordsiek G. , Strivens M.A. , Kioschis P. , Dangel A. , Cunningham D. , et al. ( 2000 ) Comparative sequence analysis of the Bpa/Str region in mouse and man. Genome Res. 10...

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