Searching journal content for articles similar to Malko et al. 16 (4): 505.

Displaying results 1-6 of 6
For checked items
  1. Research: Changes in exon–intron structure during vertebrate evolution affect the splicing pattern of exons
    • Sahar Gelfman,
    • David Burstein,
    • Osnat Penn,
    • Anna Savchenko,
    • Maayan Amit,
    • Schraga Schwartz,
    • Tal Pupko,
    • and Gil Ast
    Genome Res. January 2012 22: 35-50; Published in Advance October 5, 2011, doi:10.1101/gr.119834.110
    ...to accurately predict if an exon is constitutively or alternatively spliced? In this study, we explore evolutionary changes in exon–intron architecture, and examine their influence on alternative splicing. We analyze 17 vertebrate species, employing a -wide, comparative genomic approach. We reconstruct...
  2. Research: Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
    • Yi Liao,
    • Xinwen Zhang,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. March 2021 31: 397-410; Published in Advance February 9, 2021, doi:10.1101/gr.266130.120
    ...phenotypes between these two species, such as functional enhancer conservation (46%) (Arnold et al. 2014) and CTCF binding sites (30%) (Ni et al. 2012), but lower than others, such as BEAF-32 (>70%) (Yang et al. 2012) and alternative splicing (∼80%) (Malko 2006).View this table: In this window In a new...
  3. Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
    • Wenyu Zhang,
    • Anja Guenther,
    • Yuanxiao Gao,
    • Kristian Ullrich,
    • Bruno Huettel,
    • Aftab Ahmad,
    • Lei Duan,
    • Kaizong Wei,
    • and Diethard Tautz
    Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
    ...), including skipped exon (SE), retained intron (RI), mutually exclusive exons (MX), alternative 5′ (A5), and 3′ (A3) splice sites. Isoform diversity can also be expanded via the inclusion of alternative transcription start sites (TSSs) or transcript end sites (TESs), resulting in differences...
  4. Research: Evidence of abundant stop codon readthrough in Drosophila and other metazoa
    • Irwin Jungreis,
    • Michael F. Lin,
    • Rebecca Spokony,
    • Clara S. Chan,
    • Nicolas Negre,
    • Alec Victorsen,
    • Kevin P. White,
    • and Manolis Kellis
    Genome Res. December 2011 21: 2096-2113; Published in Advance October 12, 2011, doi:10.1101/gr.119974.110
    ..., and directed experimental evidence. We report an expanded set of 283 readthrough candidates, including 16 double-readthrough candidates; these were manually curated to rule out alternatives such as A-to-I editing, alternative splicing, dicistronic translation, and selenocysteine incorporation. We report...
    OPEN ACCESS ARTICLE
  5. Research: Genome-wide evidence for selection acting on single amino acid repeats
    • Wilfried Haerty and
    • G. Brian Golding
    Genome Res. June 2010 20: 755-760; Published in Advance January 7, 2010, doi:10.1101/gr.101246.109
    ...structure and alternative splicing in fruit flies and malarial mosquito s. Genome Res 16: 505–509. Modrek B, Lee CJ. 2003. Alternative splicing in the human, mouse and rat s is associated with an increased frequency of exon creation and/or loss. Nat Genet 34: 177–180. Mularoni L, Veitia RA, Alba MM. 2007...
  6. LETTER: Genome-Wide Analysis of the Odorant-Binding Protein Gene Family in Drosophila melanogaster
    • Daria S. Hekmat-Scafe,
    • Charles R. Scafe,
    • Aimee J. McKinney,
    • and Mark A. Tanouye
    Genome Res. September 1, 2002 12: 1357-1369; doi:10.1101/gr.239402
    ..., was extracted from GenBank. In each case, an alternative splice form that would generate an OBP-like protein was found using FGENESH ( http://genomic.sanger.ac.uk/gf/gf.html ) or Splice Site Prediction by Neural Network ( http://www.fruitfly.org/seq_tools/splice.html ). The 31 OBP-like protein sequences were...
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research