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  1. ...sets were compared independently. The comparisons used are shown above each panel, with duplication events marked by stars.The results may be influenced by the different species’ evolutionary history (e.g., polyploid plants). Therefore, each species was analyzed independently and showed consistent...
  2. ...to be a major force in evolution ( Ohno 1970 ). Genome doubling (polyploidy) has had a profound influence on the evolutionary history of extant lineages. Ohno proposed that whole- duplications occurred in the early history of all vertebrates ( Ohno 1970 ). While the hypothesis of whole- duplication...
  3. .... 2019; Cleary and Seoighe 2021; St. Pierre et al. 2022; Tian et al. 2022; Shi et al. 2024).Although there have been important novel insights into diploid and polyploid organization, especially in plants (e.g., Belser et al. 2021; Hu et al. 2021; Sun et al. 2022), less is known about the fungi...
  4. ...with a fitness advantage that allows improved establishment in saline environments (Chao et al. 2013). Polyploids may even have a higher chance of being invasive, and diploids of being endangered, on a worldwide scale (Pandit et al. 2011). Such observations support the hypothesis that recently formed polyploids...
  5. ...10.1101/gr.11.7.1315/a genome;11/7/1315/a 1549-5469 1088-9051 Errata for vol. 11, p. 667 Errata for vol. 11, p. 667 Genome Research Vol. 11, No. 5 (2001) Are We Polyploids? A Brief History of One Hypothesis Wojciech Makałowski pp. 667–670 In the Reference section, the Meyer and Ohno references...
  6. ....llorente@inserm.fr , ncecile@grignon.inra.fr , gilles.fischer@upmc.fr ↵ 6 These authors equally contributed to this work. Abstract Reconstructing genome history is complex but necessary to reveal quantitative principles governing genome evolution. Such reconstruction requires recapitulating...
  7. ..., maize, sorghum, and Brachypodium genomes, representing three different subfamilies and different polyploidization events. By focusing on these sequence intervals, we could show that the chromosome number variation/reduction from the n = 12 common paleo-ancestor was driven by nonrandom centric double...
  8. ...chromosome regions in man and the house mouse. Genomics 16 : 1 – 19 . ↵ Lynch M. , Conery J.S. ( 2000 ) The evolutionary fate and consequences of duplicate genes. Science 290 : 1151 – 1155 . ↵ Makałowski W. ( 2001 ) Are we polyploids? A brief history of one hypothesis. Genome Res. 11 : 667 – 670 . ↵ Martin A...
  9. ...transcripts beyond TEs, including many coding genes if multiple mismatches are tolerated between targets and Piwi/piRNA complexes (Fig. 1A). To test the hypothesis that in gonadal cells there may be unidentified non-TE PIWI/piRNA targets, we conducted a wide survey for transcripts associatedwith PIWI...
  10. ...–730. Hughes, A., daSilva, J., and Friedman, R. 2001. Genome Res. 11: 771–780. Are We Polyploids? A Brief History of One Hypothesis Wojciech Makałowski pp. 667–670 In the Reference section, the Meyer and Ohno references were listed incorrectly. The correct format is Meyer, A. and Schartl, M. 1999. Curr...
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