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  1. .... (C) Node-link diagram for differentially expressed miRNA–mRNA coexpression regulatory network. Red and blue represent log2 fold changes of expression between control and treated cells.In the context of development, miRNAs (18–25 nt) are the most widely studied. In mammals, miRNAs regulate ∼30...
  2. ...) by overall length and genomic location. Short ncRNAs are under 200 bp in length and include miRNAs, endo-siRNAs, and piRNAs (for reviews, see Farazi et al. 2008; Pauli et al. 2011). Long ncRNAs (lncRNAs) are >200 bp in length (Mercer et al. 2009). A majority of the novel short and long ncRNAs we identified...
  3. ...Arabidopsis plants. Mol Biol Cell 16: 5710–5718. Feng CM, Qiu Y, Van Buskirk EK, Yang EJ, Chen M. 2014a. Light-regulated gene repositioning in Arabidopsis. Nat Commun 5: 3027. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. 2014b. Genome-wide Hi-C analyses in wild-type andmutants reveal high...
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