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Research: The subgenomes show asymmetric expression of alleles in hybrid lineages of Megalobrama amblycephala × Culter alburnus
- Li Ren,
- Wuhui Li,
- Qinbo Qin,
- He Dai,
- Fengming Han,
- Jun Xiao,
- Xin Gao,
- Jialin Cui,
- Chang Wu,
- Xiaojing Yan,
- Guoliang Wang,
- Guiming Liu,
- Jia Liu,
- Jiaming Li,
- Zhong Wan,
- Conghui Yang,
- Chun Zhang,
- Min Tao,
- Jing Wang,
- Kaikun Luo,
- Shi Wang,
- Fangzhou Hu,
- Rurong Zhao,
- Xuming Li,
- Min Liu,
- Hongkun Zheng,
- Rong Zhou,
- Yuqin Shu,
- Yude Wang,
- Qinfeng Liu,
- Chenchen Tang,
- Wei Duan,
- and Shaojun Liu
Genome Res. November 2019 29: 1805-1815; Published in Advance October 24, 2019, doi:10.1101/gr.249805.119
...allopolyploid plants and a few animals (Adams 2007; Liu et al. 2016). These changes derived from hybridization and polyploidization lead to bias in homoeolog expression and expression dominance (Rapp et al. 2009; Yoo et al. 2013). Such asymmetric expression is related to the imbalanced expression...
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ARTICLES: Statistical methods for polyploid radiation hybrid mapping.
- K Lange,
- M Boehnke,
- D R Cox,
- and K L Lunetta
Genome Res. September 1995 5: 136-150; doi:10.1101/gr.5.2.136
...: 92 – 103 . Lunetta, K.L., M. Boehnke, K. Lange, and D.R. Cox. 1995. Experimental design and error detection for polyploid radiation hybrid mapping, (this issue). Matise, T.C., C.K. Farrell, and A. Chakravarti. 1995. Automated construction of radiation hybrid maps using MultiMap. In Genome mapping...
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METHODS: RHO—Radiation Hybrid Ordering
- Amir Ben-Dor,
- Benny Chor,
- and Dan Pelleg
Genome Res. March 1, 2000 10: 365-378; doi:10.1101/gr.10.3.365
.../or false-negative errors.) 8. All processes (markers distribution, breakage, retention, and typing errors) are independent. The input to the simulator are the experiment parameters RHO—Radiation Hybrid Ordering Genome Research 373 www..org c,n,m,l,p,a,b,t. The output of the simulator (like a real RH...
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LETTER: A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-qun Chen,
- Naoya Yuhki,
- Deborah Hirschmann,
- Marilyn Menotti-Raymond,
- and Stephen J. O'Brien
Genome Res. May 1, 2000 10: 691-702; doi:10.1101/gr.10.5.691
....H. , Cho K.W. ( 1999 ) Assignment of TCRB encoding the T-cell receptor beta chain gene to cat chromosome A2q25-q26 by fluorescence in situ hybridization. Cytogenet. Cell Genet. 84 : 109 – 110 . ↵ Lunetta K.L. , Boehnke M. , Lange K. , Cox D.R. ( 1995 ) Experimental design and error detection for polyploid...
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METHODS: A Fast and Scalable Radiation Hybrid Map Construction and Integration Strategy
- Richa Agarwala,
- David L. Applegate,
- Donna Maglott,
- Gregory D. Schuler,
- and Alejandro A. Schäffer
Genome Res. March 1, 2000 10: 350-364; doi:10.1101/gr.10.3.350
...A Fast and Scalable Radiation Hybrid Map Construction and Integration Strategy Richa Agarwala 1 , David L. Applegate 2 , Donna Maglott 1 , Gregory D. Schuler 1 and Alejandro A. Schäffer 1 , 3 1National Center...
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RESEARCH: An STS-Based Radiation Hybrid Map of the Human Genome
- Elizabeth A. Stewart,
- Kathleen B. McKusick,
- Amita Aggarwal,
- Ewa Bajorek,
- Shannon Brady,
- Angela Chu,
- Nicole Fang,
- David Hadley,
- Mark Harris,
- Sami Hussain,
- Richard Lee,
- Annu Maratukulam,
- Kyle O’Connor,
- Shanti Perkins,
- Mark Piercy,
- Fawn Qin,
- Tim Reif,
- Carla Sanders,
- Xiaohong She,
- Wei-Lin Sun,
- Poroshat Tabar,
- Susan Voyticky,
- Sid Cowles,
- Jian-Bing Fan,
- Chris Mader,
- John Quackenbush,
- Richard M. Myers,
- and David R. Cox
Genome Res. May 1, 1997 7: 422-433; doi:10.1101/gr.7.5.422
.... ( 1994 ) Multipoint radiation hybrid mapping: Comparison of methods, sample size requirements, and optimal study characteristics. Genomics 21 : 92 – 103 . ↵ Lunetta K.L. , Boehnke M. , Lange K. , Cox D.R. ( 1995 ) Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res...
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RESOURCE: The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
- Bhanu P. Chowdhary,
- Terje Raudsepp,
- Srinivas R. Kata,
- Glenda Goh,
- Lee V. Millon,
- Veronica Allan,
- François Piumi,
- Gérard Guérin,
- June Swinburne,
- Matthew Binns,
- Teri L. Lear,
- Jim Mickelson,
- James Murray,
- Douglas F. Antczak,
- James E. Womack,
- and Loren C. Skow
Genome Res. April 1, 2003 13: 742-751; doi:10.1101/gr.917503
...The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes Bhanu P. Chowdhary 1 , 10 , Terje Raudsepp 1 , Srinivas R. Kata 2 , Glenda Goh 1 , Lee V. Millon 3 , Veronica...
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RESEARCH: A High-Density Integrated Genetic Linkage and Radiation Hybrid Map of the Laboratory Rat
- Robert G. Steen,
- Anne E. Kwitek-Black,
- Christopher Glenn,
- Jo Gullings-Handley,
- William Van Etten,
- O. Scott Atkinson,
- Diane Appel,
- Simon Twigger,
- Melanie Muir,
- Tim Mull,
- Mary Granados,
- Mushira Kissebah,
- Kerri Russo,
- Robbin Crane,
- Michael Popp,
- Marc Peden,
- Tara Matise,
- Donna M. Brown,
- Jian Lu,
- Stephen Kingsmore,
- Peter J. Tonellato,
- Steve Rozen,
- Donna Slonim,
- Peter Young,
- Margit Knoblauch,
- Abraham Provoost,
- Detlev Ganten,
- Steven D. Colman,
- Jonathan Rothberg,
- Eric S. Lander,
- and Howard J. Jacob
Genome Res. June 1, 1999 9: AP1-AP8; Published in Advance May 21, 1999, doi:10.1101/gr.9.6.AP1
.... ↵ Lunetta K.L. , Boehnke M. , Lange K. , Cox D.R. ( 1995 ) Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res. 5 : 151 – 163 . ↵ Matise T. , Perlin M. , Chakravarti A. ( 1994 ) Automated construction of genetic linkage maps using an expert system (multi-map): A human...
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ARTICLE: Hybrid selection as a method of increasing mapping power for radiation hybrids.
- H B Jones
Genome Res. August 1996 6: 761-769; doi:10.1101/gr.6.8.761
.... Genomics 21 : 92 – 103 . Lunetta, K.L., , Boehnke, M. , Lange, K. , Cox. D.R. Lunetta, K.L., Boehnke, M. Lange, K. and Cox. D.R. 1995 . Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res. 5 : 151 – 163 . Morton, N.E. Morton, N.E. 1955 . Sequential tests...
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RESEARCH: Estimation of Distances and Map Construction Using Radiation Hybrids
- William Newell,
- Stephan Beck,
- Hans Lehrach,
- and Andrew Lyall
Genome Res. May 1, 1998 8: 493-508; doi:10.1101/gr.8.5.493
...the results of an RH mapping experiment: The radiation dose that determines the density of breaks in unit distance intervals (μ), the density of typed markers in unit distance intervals (λ), and the number of hybrids in the panel (N) that determines the significance of any detected linkage and the precision...

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