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Research: Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B
- Torunn Rønningen,
- Akshay Shah,
- Anja R. Oldenburg,
- Kristin Vekterud,
- Erwan Delbarre,
- Jan Øivind Moskaug,
- and Philippe Collas
Genome Res. December 2015 25: 1825-1835; Published in Advance September 10, 2015, doi:10.1101/gr.193748.115
.....org in vivo (Shyh-Chang et al. 2013). Since the HBP is coupled to glycolysis, our data suggest a link between cellular metabolic state, lamin A/C–chromatin interactions, and changes in gene expression at an early stage of adipogenesis in a manner consistent with changes in H2BGlcNAc levels on D1. De novo LADs...
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Resource: Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans
- Aaron C. Daugherty,
- Robin W. Yeo,
- Jason D. Buenrostro,
- William J. Greenleaf,
- Anshul Kundaje,
- and Anne Brunet
Genome Res. December 2017 27: 2096-2107; Published in Advance November 15, 2017, doi:10.1101/gr.226233.117
...as a unique transcription factor that may regulate chromatin dynamics during development. Our study provides a unique resource for C. elegans, a system in which the prevalence and importance of enhancers remains poorly characterized, and demonstrates the power of using whole organism chromatin accessibility...
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Research: A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha
- Kevin Gesson,
- Philipp Rescheneder,
- Michael P. Skoruppa,
- Arndt von Haeseler,
- Thomas Dechat,
- and Roland Foisner
Genome Res. April 2016 26: 462-473; Published in Advance January 21, 2016, doi:10.1101/gr.196220.115
...regulators such as epigeneticmodifiers, nucleosomal remodeler complexes, and transcriptional regulators. Lamin A/C-LAP2alpha complexes may contribute to this open chromatin state and thereby favor dynamic chromatin regulation. In such a scenario, gene expression changes occur in a context-dependent manner...
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Research: Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
- Xiuli Bi,
- Ying-Juan Cheng,
- Bo Hu,
- Xiaoli Ma,
- Rui Wu,
- Jia-Wei Wang,
- and Chang Liu
Genome Res. July 2017 27: 1162-1173; Published in Advance April 6, 2017, doi:10.1101/gr.215186.116
...the nuclear space. Following the discovery of lamin-associated domains (LADs), which are transcriptionally repressed chromatin regions, the nonrandom positioning of chromatin at the nuclear periphery and its biological relevance have been studied extensively in animals. However, it remains unknown whether...
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