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  1. ...of their downstream targets. Other regulators of gene expression include transcriptional cofactors that can physically interact with TFs, chromatin or components of the basal transcriptional machinery; RNA binding proteins that interact with mRNAs and regulate translation or mRNA stability; and microRNAs that repress...
  2. ...of duplication (Fig. 2C). MicroRNAs (miRNAs) are short, noncoding RNAs that fine-tune gene dosage by pairing to the 3′ untranslated region and lowering target mRNA levels (Bartel 2009). Conserved targeting by miRNAs is a feature of genes sensitive to changes in gene dosage, particularly to overexpression (Naqvi...
  3. ...can evolve gradually in complex regulatory gene networks with varying topology. PLoS Comput. Biol. 3: 164–173. Cohen, S.M., Brennecke, J., and Stark, A. 2006. Denoising feedback loops by thresholding—a new role for microRNAs. Genes & Dev. 20: 2769– 2772. Cui, Q., Yu, Z., Purisima, E.O., and Wang, E...
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