Searching journal content for articles similar to Lu and Clark 20 (2): 212.

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  1. Research: tRNA-derived small RNAs are embedded in the gene regulatory network instructing Drosophila metamorphosis
    • Junling Shi,
    • Jiaqi Xu,
    • Jun Ma,
    • and Feng He
    Genome Res. December 2023 33: 2119-2132; Published in Advance November 16, 2023, doi:10.1101/gr.278128.123
    ...simulans and Drosophila yakuba (Supplemental Fig. S5D). Altogether, these results suggested that 5′-tsRNA accumulation during the larva-to-pupa transition in Drosophila is a developmentally controlled and evolutionarily conserved event.5′-tsRNAs exert regulatory activities through target site recognition...
  2. Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
    • Satyam P. Srivastav,
    • Cédric Feschotte,
    • and Andrew G. Clark
    Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
    ...in Drosophila melanogaster, much less is known about the origin and evolution of piCs in this or any other species. To investigate piC origin and evolution, we use a population genomic approach to compare piC activity and sequence composition across eight geographically distant strains of D. melanogaster...
  3. Research: Experimentally evolving Drosophila erecta populations may fail to establish an effective piRNA-based host defense against invading P-elements
    • Divya Selvaraju,
    • Filip Wierzbicki,
    • and Robert Kofler
    Genome Res. March 2024 34: 410-425; Published in Advance March 15, 2024, doi:10.1101/gr.278706.123
    ...with the shotgun model. This is also consistent with our previous work, in which we found an insufficient number of cluster insertions in experimental Drosophila simulans populations being invaded by the P-element (Kofler et al. 2018, 2022).Finally, it was noted that dispersed TE insertions may generate piRNAs...
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  4. Resource: Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    • Jiayu Wen,
    • Jaaved Mohammed,
    • Diane Bortolamiol-Becet,
    • Harrison Tsai,
    • Nicolas Robine,
    • Jakub O. Westholm,
    • Erik Ladewig,
    • Qi Dai,
    • Katsutomo Okamura,
    • Alex S. Flynt,
    • Dayu Zhang,
    • Justen Andrews,
    • Lucy Cherbas,
    • Thomas C. Kaufman,
    • Peter Cherbas,
    • Adam Siepel,
    • and Eric C. Lai
    Genome Res. July 2014 24: 1236-1250; Published in Advance July 1, 2014, doi:10.1101/gr.161554.113
    ...Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines Jiayu Wen 1 , Jaaved Mohammed 1 , 2 , 3 , Diane Bortolamiol-Becet 1 , Harrison Tsai 1 , Nicolas Robine 1 , 4 , Jakub O. Westholm 1 , Erik Ladewig...
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  5. Resource: Small RNA expression and miRNA modification dynamics in human oocytes and early embryos
    • Pauliina Paloviita,
    • Christel Hydén-Granskog,
    • Dawit A. Yohannes,
    • Priit Paluoja,
    • Juha Kere,
    • Juha S. Tapanainen,
    • Kaarel Krjutškov,
    • Timo Tuuri,
    • Urmo Võsa,
    • and Sanna Vuoristo
    Genome Res. August 2021 31: 1474-1485; doi:10.1101/gr.268193.120
    ....106054.110 ↵Bushati N, Stark A, Brennecke J, Cohen SM. 2008. Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila. Curr Biol 18: 501–506. doi:10.1016/j.cub.2008.02.081 ↵Christou-Kent M, Dhellemmes M...
  6. Research: Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures
    • Yuliya A. Sytnikova,
    • Reazur Rahman,
    • Gung-wei Chirn,
    • Josef P. Clark,
    • and Nelson C. Lau
    Genome Res. December 2014 24: 1977-1990; Published in Advance September 29, 2014, doi:10.1101/gr.178129.114
    ...RNAs (piRNAs) repress transposable elements (TEs) from mobilizing in gonadal cells. To determine the spectrum of piRNA-regulated targets that may extend beyond TEs, we conducted a genome-wide survey for transcripts associated with PIWI and for transcripts affected by PIWI knockdown in Drosophila...
  7. Research: Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression
    • Runsheng Li,
    • Xiaoliang Ren,
    • Yu Bi,
    • Vincy Wing Sze Ho,
    • Chia-Ling Hsieh,
    • Amanda Young,
    • Zhihong Zhang,
    • Tingting Lin,
    • Yanmei Zhao,
    • Long Miao,
    • Peter Sarkies,
    • and Zhongying Zhao
    Genome Res. September 2016 26: 1219-1232; Published in Advance May 18, 2016, doi:10.1101/gr.204479.116
    ...dysgenesis between different Drosophila species (Kelleher et al. 2012). In C. elegans, piRNAs, also known as 21U-RNAs, associate with the Piwi protein PRG-1 and target TEs for silencing via the induction of 22G RNAs (Batista et al. 2008; Das et al. 2008). piRNAs also target both transgenes and endogenous...
  8. Letter: Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
    • Javier Armisen,
    • Michael J. Gilchrist,
    • Anna Wilczynska,
    • Nancy Standart,
    • and Eric A. Miska
    Genome Res. October 2009 19: 1766-1775; Published in Advance July 23, 2009, doi:10.1101/gr.093054.109
    ...(miRNAs), endogenous siRNAs (endo-siRNAs), and Piwi-interacting RNAs (piRNAs) in other species we suspected that these bands could represent miRNAs, endosiRNAs, and piRNAs in X. tropicalis and X. laevis, respectively. To test this hypothesis, we took advantage of the fact that in mouse and Drosophila...
  9. Research: Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus
    • Jaaved Mohammed,
    • Alex S. Flynt,
    • Alexandra M. Panzarino,
    • Md Mosharrof Hossain Mondal,
    • Matthew DeCruz,
    • Adam Siepel,
    • and Eric C. Lai
    Genome Res. January 2018 28: 52-65; Published in Advance December 12, 2017, doi:10.1101/gr.226068.117
    ...closely related species, consistent with the notion of adaptive targeting behavior.Preferential 3′ untemplated uridylation of mirtronsApproximately 54% (232 of 428) of mirtron and tailed-mirtron annotations in Drosophila are new to our study, and are recently emerged. This large set of novel spliced miRNAs...
  10. Research: Cnidarian microRNAs frequently regulate targets by cleavage
    • Yehu Moran,
    • David Fredman,
    • Daniela Praher,
    • Xin Z. Li,
    • Liang Meng Wee,
    • Fabian Rentzsch,
    • Phillip D. Zamore,
    • Ulrich Technau,
    • and Hervé Seitz
    Genome Res. April 2014 24: 651-663; Published in Advance March 18, 2014, doi:10.1101/gr.162503.113
    ...cleavage. (A) Distribution of miRNA:mRNA alignment mismatch scores in Nematostella vectensis, Homo sapiens, Drosophila melanogaster, and Arabidopsis thaliana, shown as the difference in abundance between miRNAs and matching shuffledmiRNAs, counting the fraction of sequences in each set having a best match...
    OPEN ACCESS ARTICLE
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