Searching journal content for articles similar to Loomis 26 (9): 1161.

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  1. Resource: Transcriptional milestones in Dictyostelium development
    • Mariko Katoh-Kurasawa,
    • Karin Hrovatin,
    • Shigenori Hirose,
    • Amanda Webb,
    • Hsing-I Ho,
    • Blaž Zupan,
    • and Gad Shaulsky
    Genome Res. August 2021 31: 1498-1511; Published in Advance June 28, 2021, doi:10.1101/gr.275496.121
    ...exploration through the web application dictyExpress and the data mining environment Orange.Dictyostelium discoideum is a social amoeba that lives in the soil and feeds on bacteria (Kessin 2001). The vegetative stage of life is mainly solitary, although predation can be cooperative (Rubin et al. 2019). Upon...
  2. Method: Gene discovery by chemical mutagenesis and whole-genome sequencing in Dictyostelium
    • Cheng-Lin Frank Li,
    • Balaji Santhanam,
    • Amanda Nicole Webb,
    • Blaž Zupan,
    • and Gad Shaulsky
    Genome Res. September 2016 26: 1268-1276; Published in Advance June 15, 2016, doi:10.1101/gr.205682.116
    ...gene. We tested the hypothesis by performing three genetic screens with chemical mutagenesis in the social soil amoeba Dictyostelium discoideum. Through sequencing, we successfully identified mutant genes with multiple alleles in near-saturation screens, including resistance to intense illumination...
  3. LETTER: De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: Performance of Markov-dependent genome feature scoring
    • Pontus Larsson,
    • Andrea Hinas,
    • David H. Ardell,
    • Leif A. Kirsebom,
    • Anders Virtanen,
    • and Fredrik Söderbom
    Genome Res. June 2008 18: 888-899; Published in Advance March 17, 2008, doi:10.1101/gr.069104.107
    ...in predicting RNA structures. A model based on a first-order partial sum process (analyzing overlapping dinucleotides) had better sensitivity and specificity than a zeroth-order model when applied to the AT-rich of the amoeba Dictyostelium discoideum . In this , we detected 94% of previously known ncRNA genes...
  4. LETTER: Molecular and phylogenetic analyses reveal mammalian-like clockwork in the honey bee (Apis mellifera) and shed new light on the molecular evolution of the circadian clock
    • Elad B. Rubin,
    • Yair Shemesh,
    • Mira Cohen,
    • Sharona Elgavish,
    • Hugh M. Robertson,
    • and Guy Bloch
    Genome Res. November 2006 16: 1352-1365; Published in Advance October 25, 2006, doi:10.1101/gr.5094806
    .... 2 ) suggests that these two paralogous protein lineages evolved from gene duplication in early animals; a single convincing ortholog is available from plants, fungi, and the social amoeba Dictyostelium ( Eichinger et al. 2005 ). The canonical Timeless/TIM1 protein of D. melanogaster that is missing...
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