Searching journal content for articles similar to Lobo et al..

Displaying results 1-10 of 6321

For checked items

view abstracts
download to citation manager

Select this article
Review: Recent advances in methods to characterize archaic introgression in modern humans
- David Peede,
- Mayra M. Bañuelos,
- Jazeps Medina Tretmanis,
- Miriam Miyagi,
- and Emilia Huerta-Sánchez
Genome Res. February 2026 36: 239-256; Published in Advance January 16, 2026, doi:10.1101/gr.278993.124
...introgression presents unique challenges, particularly because of the limitations of ancient DNA (aDNA) sequencing. Although extensive genomic data exists for modern populations (The 1000 Genomes Project Consortium 2015; Mallick et al. 2016; Bergström et al. 2020; Byrska-Bishop et al. 2022), high...
OPEN ACCESS ARTICLE
Select this article
Research: Stable genome structures in living fossil fishes
- Cheng Wang,
- Chase D. Brownstein,
- Wenjun Chen,
- Zufa Ding,
- Dan Yu,
- Yu Deng,
- Chenguang Feng,
- Thomas J. Near,
- Shunping He,
- and Liandong Yang
Genome Res. February 2026 36: 318-329; Published in Advance January 13, 2026, doi:10.1101/gr.280800.125
...and genomic features of gars, (2) assess the conservation of gars in comparison with other vertebrates, (3) examine the rates of chromosome rearrangement and repeat evolution in gars relative to other vertebrates, and (4) determine whether there has been ancient gene flow among gar species based...
Select this article
Mini-Review: Large-scale genomic analysis of the domestic dog informs biological discovery
- Reuben M. Buckley and
- Elaine A. Ostrander
Genome Res. June 2024 34: 811-821; Published in Advance July 2, 2024, doi:10.1101/gr.278569.123
...drive rare variant discovery and assess the geographic distribution of canine diversity, which identifies Asia as a major source of missing variation. Finally, we review recent comparative genomic analyses that will facilitate annotation of the noncoding in dogs.The domestic dog has increasingly been...
OPEN ACCESS ARTICLE
Select this article
Research: Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells
- Jennifer A. Urban,
- Daniel Ringwalt,
- John M. Urban,
- Wingel Xue,
- Ryan Gleason,
- Keji Zhao,
- and Xin Chen
Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
...-type testis tissue have made it difficult to generate comprehensive cell-type-specific genomic data sets defining their global transcriptional, chromatin, and replication landscapes. To address this, we developed cell-type-specific genomic strategies for testicular stem cells derived from a tumor model...
OPEN ACCESS ARTICLE
Select this article
Research: Molecular and genetic landscapes of retina and brain microglia in neurodegenerative diseases
- Khang Ma and
- Rinki Ratnapriya
Genome Res. October 2025 35: 2143-2157; Published in Advance August 26, 2025, doi:10.1101/gr.280554.125
...and AD. First, we used multimarker analysis of GenoMic annotation (MAGMA) (de Leeuw et al. 2015), which uses a multiple regression approach to properly incorporate LD between markers and to detect multimarker effects. For this analysis, we used summary statistics from two GWAS studies: one with 16...
Select this article
Research: Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population
- Agnese Viluma,
- Øystein Flagstad,
- Mikael Åkesson,
- Camilla Wikenros,
- Håkan Sand,
- Petter Wabakken,
- and Hans Ellegren
Genome Res. March 2022 32: 449-458; Published in Advance February 8, 2022, doi:10.1101/gr.276070.121
..., Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, et al. 2016. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biol 17: 251. doi:10.1186/s13059-016-1090-1 ↵Åkesson M, Liberg O, Sand H, Wabakken P, Bensch S, Flagstad Ø. 2016...
OPEN ACCESS ARTICLE
Select this article
Research: Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
- Liangxi Wang,
- Tiegh Taylor,
- Kumaragurubaran Rathnakumar,
- Nadiya Khyzha,
- Minggao Liang,
- Azad Alizada,
- Laura F. Campitelli,
- Sara E. Pour,
- Zain M. Patel,
- Lina Antounians,
- Ian C. Tobias,
- Huayun Hou,
- Timothy R. Hughes,
- Sushmita Roy,
- Jennifer A. Mitchell,
- Jason E. Fish,
- and Michael D. Wilson
Genome Res. July 2025 35: 1544-1559; Published in Advance June 6, 2025, doi:10.1101/gr.280357.124
...decayed during early primate evolution (>50 million years ago [MYA]) before stabilizing since the separation of Old World monkeys (<50 MYA). Taken together, our results suggest ancient and lineage-specific transposon subfamilies contributed to mammalian NF-kB regulatory networks.Transposable elements (TEs...
Select this article
Research: Birth of protein-coding exons by ancient domestication of LINE-1 retrotransposon
- Koichi Kitao,
- Kenji Ichiyanagi,
- and So Nakagawa
Genome Res. June 2025 35: 1287-1300; Published in Advance May 8, 2025, doi:10.1101/gr.280007.124
...Koichi Kitao1, Kenji Ichiyanagi1 and So Nakagawa2,3,4 1Laboratory of Genome and Epi Dynamics, Department of Animal Sciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; 2Department of Molecular Life Science, Tokai University School...
Select this article
Research: Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat
- Jingwei Zhou,
- Yuhong Huang,
- Huan Ma,
- Yiqian Chen,
- Chuanye Chen,
- Fangpu Han,
- and Handong Su
Genome Res. November 2025 35: 2461-2471; Published in Advance September 30, 2025, doi:10.1101/gr.280913.125
...-quality reads and adapters were removed using fastp (v0.20.1) (Chen et al. 2018). The cleaned reads were aligned to the near gap-free reference of CS (Liu et al. 2025; Wang et al. 2025) using BWA-MEM (v0.7.17) with default parameters (Li and Durbin 2009). Genomic data visualization was facilitated using...
Select this article
Research: Haplotype-resolved telomere-to-telomere genome of Aphelenchus avenae implicates P5CS in nematode desiccation stress response
- Yali Zhang,
- Yayi Zhou,
- Yangyang Chen,
- Xueyu Wang,
- Boyan Hu,
- Shahid Siddique,
- Romnick A. Latina,
- Veronica I. Casey,
- Dexin Bo,
- Yucheng Liao,
- Min Zhang,
- Ming Sun,
- Fengjuan Zhang,
- and Dadong Dai
Genome Res. March 23, 2026 ; Published in Advance March 23, 2026, doi:10.1101/gr.281016.125
...generate signals on both chromosomes simultaneously, yet they are ultimately assigned to only one chromosome (Supplemental Fig. S10). To further explore the genomic landscape of A. avenae, we performed a Pfam search and annotation on all its protein sequences and discovered five potential DNA 6m...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Lobo et al..

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: