Searching journal content for articles similar to Liu et al. 27 (10): 1685.

Displaying results 1-10 of 31

For checked items

view abstracts
download to citation manager

Select this article
Method: Delineating yeast cleavage and polyadenylation signals using deep learning
- Emily Kunce Stroup and
- Zhe Ji
Genome Res. July 2024 34: 1066-1080; Published in Advance June 24, 2024, doi:10.1101/gr.278606.123
...stress conditions (Geisberg et al. 2023). Moreover, the poly(A) sites from another yeast species Schizosaccharomyces pombe show different sequence composition versus S. cerevisiae (Liu et al. 2017). Currently, the polyadenylation complexes in S. pombe remain uncharacterized. It remains an open question...
Select this article
Research: Evolutionary dynamics of polyadenylation signals and their recognition strategies in protists
- Marcin P. Sajek,
- Danielle Y. Bilodeau,
- Michael A. Beer,
- Emma Horton,
- Yukiko Miyamoto,
- Katrina B. Velle,
- Lars Eckmann,
- Lillian Fritz-Laylin,
- Olivia S. Rissland,
- and Neelanjan Mukherjee
Genome Res. October 2024 34: 1570-1581; Published in Advance September 26, 2024, doi:10.1101/gr.279526.124
...studies as well as new therapeutic angles to target eukaryotic pathogens.Cleavage and polyadenylation (CPA) are key steps in eukaryotic mRNA maturation, specifying the 3′ end of the transcript and the addition of the poly(A) tail. Required for the proper expression of nearly all mRNAs, the site of pre...
Select this article
Resource: Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
- José Carlos Montañés,
- Marta Huertas,
- Simone G. Moro,
- William R. Blevins,
- Mercè Carmona,
- José Ayté,
- Elena Hidalgo,
- and M. Mar Albà
Genome Res. June 2022 32: 1215-1227; Published in Advance May 26, 2022, doi:10.1101/gr.276516.121
...we leverage Oxford Nanopore Technologies native RNA sequencing (dRNA), as well as ribosome profiling data, to uncover the full range of polyadenylated transcripts and translated open reading frames. We identify 332 alternative isoforms affecting the coding sequences of 262 different genes, 97...
Select this article
Research: A compendium of conserved cleavage and polyadenylation events in mammalian genes
- Ruijia Wang,
- Dinghai Zheng,
- Ghassan Yehia,
- and Bin Tian
Genome Res. October 2018 28: 1427-1441; Published in Advance August 24, 2018, doi:10.1101/gr.237826.118
..., Rutgers University, New Brunswick, New Jersey 08901, USA Corresponding author: btian@rutgers.eduAbstractCleavage and polyadenylation is essential for 3′ end processing of almost all eukaryotic mRNAs. Recent studies have shown widespread alternative cleavage and polyadenylation (APA) events leading to m...
Select this article
Method: The dynamic landscape of fission yeast meiosis alternative-splice isoforms
- Zheng Kuang,
- Jef D. Boeke,
- and Stefan Canzar
Genome Res. January 2017 27: 145-156; Published in Advance November 17, 2016, doi:10.1101/gr.208041.116
..., in particular, the origin of AS. Saccharomyces cerevisiae and Schizosaccharomyces pombe are the two most documented unicellular model organisms. S. cerevisiae has ∼280 intron-containing genes, and the vast majority of them have a single intron. On the contrary, >2200 genes in S. pombe are currently known...
Select this article
Method: Kinetic measurement of gene-specific RNA polymerase II transcription elongation rates
- Haiyue Liu and
- Lea H. Gregersen
Genome Res. November 2025 35: 2550-2562; Published in Advance October 22, 2025, doi:10.1101/gr.280852.125
...RNP) complex involved in splicing and suppression of cryptic intronic polyadenylation similarly stimulates elongation and facilitates transcription of long genes (Mimoso and Adelman 2023). Furthermore, RNAPII elongation rates are modulated in response to certain stresses and stimuli such as heat shock and UV...
OPEN ACCESS ARTICLE
Select this article
Method: System-wide analyses of the fission yeast poly(A)⁺ RNA interactome reveal insights into organization and function of RNA–protein complexes
- Cornelia Kilchert,
- Tea Kecman,
- Emily Priest,
- Svenja Hester,
- Ebru Aydin,
- Krzysztof Kus,
- Oliver Rossbach,
- Alfredo Castello,
- Shabaz Mohammed,
- and Lidia Vasiljeva
Genome Res. July 2020 30: 1012-1026; Published in Advance June 18, 2020, doi:10.1101/gr.257006.119
...). For reference, standard gene names for enriched RPs are given in Supplemental Fig. S2B. (B) Structure of the Saccharomyces cerevisiae 80S ribosome [PDB:5MC6] (Schmidt et al. 2016). RPs with S. pombe orthologs that were highly significantly enriched on poly(A)+ RNA are designated in blue. For reference, the m...
OPEN ACCESS ARTICLE
Select this article
Research: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast
- Gregory T. Booth,
- Isabel X. Wang,
- Vivian G. Cheung,
- and John T. Lis
Genome Res. June 2016 26: 799-811; Published in Advance May 12, 2016, doi:10.1101/gr.204578.116
...at least 1 kb from any other genes on the same strand (S. pombe: n = 874; S. cerevisiae: n = 1101). We then generated scaled composite profiles in which the region between 300 bp downstream from the observed TSS and 300 bp upstream of the cleavage and polyadenylation signal (CPS) is scaled to the same...
Select this article
Research: Long-read sequencing of nascent RNA reveals coupling among RNA processing events
- Lydia Herzel,
- Korinna Straube,
- and Karla M. Neugebauer
Genome Res. July 2018 28: 1008-1019; Published in Advance June 14, 2018, doi:10.1101/gr.232025.117
...), indicating that a substantial fraction of partially spliced transcripts will be stable, polyadenylated, cytoplasmic mRNAs that likely represent alternative mRNA isoforms in S. pombe (Kuang et al. 2017). In conclusion, LRS of nascent transcripts provides a snapshot of splicing states for multi...
Select this article
LETTER: Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae
- Michaël Bekaert,
- Hugues Richard,
- Bernard Prum,
- and Jean-Pierre Rousset
Genome Res. October 2005 15: 1411-1420; doi:10.1101/gr.4258005
...Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae Michaël Bekaert 1 , Hugues Richard 2 , Bernard Prum 2 , and Jean-Pierre Rousset 1 , 3 1 Institut de Génétique et...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Liu et al. 27 (10): 1685.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: