Searching journal content for articles similar to Liu et al. 26 (8): 1057.

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  1. Research: Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis
    • Ying Huang,
    • Sanchari Sicar,
    • Juan S. Ramirez-Prado,
    • Deborah Manza-Mianza,
    • Javier Antunez-Sanchez,
    • Rim Brik-Chaouche,
    • Natalia Y. Rodriguez-Granados,
    • Jing An,
    • Catherine Bergounioux,
    • Magdy M. Mahfouz,
    • Heribert Hirt,
    • Martin Crespi,
    • Lorenzo Concia,
    • Fredy Barneche,
    • Simon Amiard,
    • Aline V. Probst,
    • Jose Gutierrez-Marcos,
    • Federico Ariel,
    • Cécile Raynaud,
    • David Latrasse,
    • and Moussa Benhamed
    Genome Res. July 2021 31: 1230-1244; Published in Advance June 3, 2021, doi:10.1101/gr.273771.120
    ...acts directly or indirectly to regulate chromatin interactions, although how this histone modification modulates 3D chromatin architecture remains elusive. To decipher the impact of the dynamic deposition of H3K27me3 on the Arabidopsis thaliana nuclear interactome, we combined genetics, transcriptomics...
  2. Research: Differences in firing efficiency, chromatin, and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins
    • Joana Sequeira-Mendes,
    • Zaida Vergara,
    • Ramon Peiró,
    • Jordi Morata,
    • Irene Aragüez,
    • Celina Costas,
    • Raul Mendez-Giraldez,
    • Josep M. Casacuberta,
    • Ugo Bastolla,
    • and Crisanto Gutierrez
    Genome Res. May 2019 29: 784-797; Published in Advance March 7, 2019, doi:10.1101/gr.240986.118
    ...in multicellular organisms in the context of growing organs to understand their developmental plasticity. We have identified a set of ORIs of Arabidopsis thaliana and their chromatin landscape at two stages of post-embryonic development. ORIs associate with multiple chromatin signatures including transcription...
  3. Research: Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
    • Xiuli Bi,
    • Ying-Juan Cheng,
    • Bo Hu,
    • Xiaoli Ma,
    • Rui Wu,
    • Jia-Wei Wang,
    • and Chang Liu
    Genome Res. July 2017 27: 1162-1173; Published in Advance April 6, 2017, doi:10.1101/gr.215186.116
    ...Arabidopsis plants. Mol Biol Cell 16: 5710–5718. Feng CM, Qiu Y, Van Buskirk EK, Yang EJ, Chen M. 2014a. Light-regulated gene repositioning in Arabidopsis. Nat Commun 5: 3027. Feng S, Cokus SJ, Schubert V, Zhai J, Pellegrini M, Jacobsen SE. 2014b. Genome-wide Hi-C analyses in wild-type andmutants reveal high-resolution...
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  4. Research: Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
    • Yi Liao,
    • Xinwen Zhang,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. March 2021 31: 397-410; Published in Advance February 9, 2021, doi:10.1101/gr.266130.120
    ...found in Arabidopsis thaliana (Liu et al. 2016) and gene crumples in Saccharomyces cerevisiae (Hsieh et al. 2015). Moreover, such gene-level domains are more likely to be cell-, tissue-, or developmental stage-specific because we detected substantially more (129 or 46%) genes in individual cell lines...
  5. Research: Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
    • Ruth A. Swanson-Wagner,
    • Steven R. Eichten,
    • Sunita Kumari,
    • Peter Tiffin,
    • Joshua C. Stein,
    • Doreen Ware,
    • and Nathan M. Springer
    Genome Res. December 2010 20: 1689-1699; Published in Advance October 29, 2010, doi:10.1101/gr.109165.110
    .... elegans (Maydan et al. 2010) and Arabidopsis thaliana (Santuari et al. 2010) have also identified numerous CNVs. Zea mays (maize) is a highly polymorphic species (for review, see Buckler et al. 2006; Messing and Dooner 2006; Springer and Stupar 2007). The recent completion of a reference from one genotype...
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