Searching journal content for articles similar to Liu et al. 13 (4): 654.

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  1. Method: High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
    • Cynthia A. Kalita,
    • Christopher D. Brown,
    • Andrew Freiman,
    • Jenna Isherwood,
    • Xiaoquan Wen,
    • Roger Pique-Regi,
    • and Francesca Luca
    Genome Res. November 2018 28: 1701-1708; Published in Advance September 25, 2018, doi:10.1101/gr.237354.118
    .... Pediatr Int 57: 1149–1153. ↵Levo M, Zalckvar E, Sharon E, Dantas Machado AC, Kalma Y, Lotam-Pompan M, Weinberger A, Yakhini Z, Rohs R, Segal E. 2015. Unraveling determinants of transcription factor binding outside the core binding site. Genome Res 25: 1018–1029. ↵Li Q, Verma IM. 2002. NF-κB regulation...
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  2. LETTER: Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
    • Yutaka Suzuki,
    • Riu Yamashita,
    • Matsuyuki Shirota,
    • Yuta Sakakibara,
    • Joe Chiba,
    • Junko Mizushima-Sugano,
    • Kenta Nakai,
    • and Sumio Sugano
    Genome Res. September 2004 14: 1711-1718; doi:10.1101/gr.2435604
    ...., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. 2001 . Initial sequencing and analysis of the human . Nature 409 : 860 -921. ↵ Liu, R., McEachin, R.C., and States, D.J. 2003 . Computationally identifying novel NF-κB-regulated immune genes in the human . Genome...
  3. Research: Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response
    • Petros Kolovos,
    • Theodore Georgomanolis,
    • Anna Koeferle,
    • Joshua D. Larkin,
    • Lilija Brant,
    • Miloš Nikolicć,
    • Eduardo G. Gusmao,
    • Anne Zirkel,
    • Tobias A. Knoch,
    • Wilfred F. van Ijcken,
    • Peter R. Cook,
    • Ivan G. Costa,
    • Frank G. Grosveld,
    • and Argyris Papantonis
    Genome Res. November 2016 26: 1478-1489; Published in Advance September 15, 2016, doi:10.1101/gr.210005.116
    ..., proinflammatory stimulation is linked to both acute and chronic disorders (Libby et al. 2011; Brown et al. 2014), and we previously used these cells to characterize the dynamic clustering of NF-κB–regulated genes in 3D space (Papantonis et al. 2012), and global chromatin “priming” prior to NF...
  4. Methods: A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles
    • Li-Wei Chang,
    • Rakesh Nagarajan,
    • Jeffrey A. Magee,
    • Jeffrey Milbrandt,
    • and Gary D. Stormo
    Genome Res. March 2006 16: 405-413; Published in Advance January 31, 2006, doi:10.1101/gr.4303406
    ..., R., McEachin, R.C., and States, D.J. 2003 . Computationally identifying novel NF-κB-regulated immune genes in the human . Genome Res. 13 : 654 –661. ↵ Louie, E., Ott, J., and Majewski, J. 2003 . Nucleotide frequency variation across human genes. Genome Res. 13 : 2594 –2601. ↵ Magee, J.A., Abdulkadir...
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