Searching journal content for articles similar to Lin et al. 34 (2): 310.

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  1. Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
    • Xin Li,
    • San-Gang He,
    • Wen-Rong Li,
    • Ling-Yun Luo,
    • Ze Yan,
    • Dong-Xin Mo,
    • Xing Wan,
    • Feng-Hua Lv,
    • Ji Yang,
    • Ya-Xi Xu,
    • Juan Deng,
    • Qiang-Hui Zhu,
    • Xing-Long Xie,
    • Song-Song Xu,
    • Chen-Xi Liu,
    • Xin-Rong Peng,
    • Bin Han,
    • Zhong-Hui Li,
    • Lei Chen,
    • Jian-Lin Han,
    • Xue-Zhi Ding,
    • Renqing Dingkao,
    • Yue-Feng Chu,
    • Jin-Yan Wu,
    • Li-Min Wang,
    • Ping Zhou,
    • Ming-Jun Liu,
    • and Meng-Hua Li
    Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
    ...provide the diploid chromatin architecture for understanding the parent-of-origin effects and the regulation (e.g., cis- or trans-acting regulatory variation) of allele-specific expression (ASE) between homologous chromosomes. Additionally, haplotype-resolved diploid s of the F1-hybrid will help...
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  2. Resource: Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
    • Yang Zhou,
    • Lv Yang,
    • Xiaotao Han,
    • Jiazheng Han,
    • Yan Hu,
    • Fan Li,
    • Han Xia,
    • Lingwei Peng,
    • Clarissa Boschiero,
    • Benjamin D. Rosen,
    • Derek M. Bickhart,
    • Shujun Zhang,
    • Aizhen Guo,
    • Curtis P. Van Tassell,
    • Timothy P.L. Smith,
    • Liguo Yang,
    • and George E. Liu
    Genome Res. August 2022 32: 1585-1601; Published in Advance August 17, 2022, doi:10.1101/gr.276550.122
    ...species based on the creation of high-quality complete assemblies of representatives of as many existing breeds as practical. Members of the consortium have applied the trio binning approach (Koren et al. 2018) to improve efficiency and have generated highly contiguous, haplotype-resolved assemblies...
  3. Research: Accumulation and ineffective silencing of transposable elements on an avian W Chromosome
    • Vera M. Warmuth,
    • Matthias H. Weissensteiner,
    • and Jochen B.W. Wolf
    Genome Res. April 2022 32: 671-681; Published in Advance February 11, 2022, doi:10.1101/gr.275465.121
    ...of TEs on expression of nearby genes are to be interpreted with caution.To circumvent the above-mentioned reference bias for insertion–deletion polymorphisms, future studies of TE activity will require a data set combining transcriptome data with haplotype-resolved de novo assemblies for all individuals...
  4. Resource: Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
    • Flavia Angela Maria Maggiolini,
    • Ashley D. Sanders,
    • Colin James Shew,
    • Arvis Sulovari,
    • Yafei Mao,
    • Marta Puig,
    • Claudia Rita Catacchio,
    • Maria Dellino,
    • Donato Palmisano,
    • Ludovica Mercuri,
    • Miriana Bitonto,
    • David Porubský,
    • Mario Cáceres,
    • Evan E. Eichler,
    • Mario Ventura,
    • Megan Y. Dennis,
    • Jan O. Korbel,
    • and Francesca Antonacci
    Genome Res. November 2020 30: 1680-1693; Published in Advance October 22, 2020, doi:10.1101/gr.265322.120
    ...by fluorescence in situ hybridization (FISH) in the same Macaca mulatta individual (MMU1) for which Strand-seq data were generated. To also define if an inversion was polymorphic, 14 inversions were tested on two additional macaque individuals (M. mulatta, MMU2; Macaca fascicularis, MFA63). Owing to technical...
  5. Perspective: Enabling functional genomics with genome engineering
    • Isaac B. Hilton and
    • Charles A. Gersbach
    Genome Res. October 2015 25: 1442-1455; doi:10.1101/gr.190124.115
    ...the potential to dramatically improve medicine, agriculture, biotechnology, and our fundamental understanding of living systems. Recent advances have generated extensive annotation of genomic and epigenomic regulatory modules within chromatin (Bernstein et al. 2010; The ENCODE Project Consortium 2012; Roadmap...
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