Searching journal content for articles similar to Li et al. 27 (5): 865.

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  1. Resource: Haplotype-resolved 3D chromatin architecture of the hybrid pig
    • Yu Lin,
    • Jing Li,
    • Yiren Gu,
    • Long Jin,
    • Jingyi Bai,
    • Jiaman Zhang,
    • Yujie Wang,
    • Pengliang Liu,
    • Keren Long,
    • Mengnan He,
    • Diyan Li,
    • Can Liu,
    • Ziyin Han,
    • Yu Zhang,
    • Xiaokai Li,
    • Bo Zeng,
    • Lu Lu,
    • Fanli Kong,
    • Ying Sun,
    • Yongliang Fan,
    • Xun Wang,
    • Tao Wang,
    • An'an Jiang,
    • Jideng Ma,
    • Linyuan Shen,
    • Li Zhu,
    • Yanzhi Jiang,
    • Guoqing Tang,
    • Xiaolan Fan,
    • Qingyou Liu,
    • Hua Li,
    • Jinyong Wang,
    • Li Chen,
    • Liangpeng Ge,
    • Xuewei Li,
    • Qianzi Tang,
    • and Mingzhou Li
    Genome Res. February 2024 34: 310-325; Published in Advance March 13, 2024, doi:10.1101/gr.278101.123
    ..., skeletal muscle, and brain) from hybrid pigs generated by reciprocal crosses of phenotypically and physiologically divergent Berkshire and Tibetan pigs, we uncover extensive chromatin reorganization between homologous chromosomes across multiple scales. Haplotype-based interrogation of multi-omic data...
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  2. Resource: The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
    • Zhengcao Li,
    • Xiaohong Liu,
    • Chen Wang,
    • Zhenyang Li,
    • Bo Jiang,
    • Ruifeng Zhang,
    • Lu Tong,
    • Youping Qu,
    • Sheng He,
    • Haifan Chen,
    • Yafei Mao,
    • Qingnan Li,
    • Torsten Pook,
    • Yu Wu,
    • Yanjun Zan,
    • Hui Zhang,
    • Lu Li,
    • Keying Wen,
    • and Yaosheng Chen
    Genome Res. October 2023 33: 1833-1847; Published in Advance November 1, 2023, doi:10.1101/gr.277638.122
    ...depth of ∼30×, leading to a total of 250 pigs with 90 animals from European breeds and 160 animals from Chinese breeds. (Supplemental Tables S2, S3).Genome assembly and pan constructionRaw reads of all 250 individuals were de novo assembled using MaSuRCA (Zimin et al. 2013). The quality...
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  3. Resource: The landscape of human STR variation
    • Thomas Willems,
    • Melissa Gymrek,
    • Gareth Highnam,
    • The 1000 Genomes Project Consortium,
    • David Mittelman,
    • and Yaniv Erlich
    Genome Res. November 2014 24: 1894-1904; Published in Advance August 18, 2014, doi:10.1101/gr.177774.114
    ...The landscape of human STR variation Thomas Willems 1 , 2 , Melissa Gymrek 1 , 3 , 4 , 5 , Gareth Highnam 6 , The 1000 Genomes Project Consortium , David Mittelman 6 , 7 and Yaniv Erlich 1...
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  4. Method: Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
    • Chencheng Xu,
    • Suying Bao,
    • Ye Wang,
    • Wenxing Li,
    • Hao Chen,
    • Yufeng Shen,
    • Tao Jiang,
    • and Chaolin Zhang
    Genome Res. July 2024 34: 1052-1065; Published in Advance July 26, 2024, doi:10.1101/gr.279044.124
    ...reference-informed predictions can improve the discovery of splicing-altering mutations, we next tested DeltaSplice and the other compared methods using multiple data sets derived from high-throughput splicing reporter assays. These data sets include the impact of single-nucleotide variants (SNVs...
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