Searching journal content for articles similar to Li et al. 25 (2): 235.

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  1. Research: Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
    • Xiuli Bi,
    • Ying-Juan Cheng,
    • Bo Hu,
    • Xiaoli Ma,
    • Rui Wu,
    • Jia-Wei Wang,
    • and Chang Liu
    Genome Res. July 2017 27: 1162-1173; Published in Advance April 6, 2017, doi:10.1101/gr.215186.116
    ...to regulate TEs (Zemach et al. 2013), as well as how certain components of one pathway interact with each other (e.g., a recently reported positive feedback loop between Pol IV-dependent small RNA biogenesis and DRM2-dependent CHHmethylation (Li et al. 2015)). It would also be of great interest to further...
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  2. Research: Genome-wide redistribution of 24-nt siRNAs in rice gametes
    • Chenxin Li,
    • Hengping Xu,
    • Fang-Fang Fu,
    • Scott D. Russell,
    • Venkatesan Sundaresan,
    • and Jonathan I. Gent
    Genome Res. February 2020 30: 173-184; Published in Advance January 2, 2020, doi:10.1101/gr.253674.119
    ...).Sequencing small RNAs from Arabidopsis whole pollen and isolated sperm indicates that 24-nt siRNAs typical of RNA polymerase IV (Pol IV) activity are the most abundant length, but 21-nt and 22-nt siRNAs increase in abundance in sperm cells relative to vegetative tissues (Slotkin et al. 2009; Borges et al...
  3. Research: Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
    • Atul Kakrana,
    • Sandra M. Mathioni,
    • Kun Huang,
    • Reza Hammond,
    • Lee Vandivier,
    • Parth Patel,
    • Siwaret Arikit,
    • Olga Shevchenko,
    • Alex E. Harkess,
    • Bruce Kingham,
    • Brian D. Gregory,
    • James H. Leebens-Mack,
    • and Blake C. Meyers
    Genome Res. September 2018 28: 1333-1344; Published in Advance July 12, 2018, doi:10.1101/gr.228163.117
    ...and abundant phased, secondary siRNAs (phasiRNAs) (Johnson et al. 2009; Zhai et al. 2015; Fei et al. 2016). These phasiRNAs are produced from 5′-capped and polyadenylated, noncoding precursors (“PHAS” transcripts) transcribed by RNA polymerase II (Pol II) from nonrepetitive loci. Their production is triggered...
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