Searching journal content for articles similar to Lee et al. 30 (4): 576.

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  1. Research: Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza
    • Rodolphe Dombey,
    • Daniel Buendía-Ávila,
    • Verónica Barragán-Borrero,
    • Laura Diezma-Navas,
    • Arturo Ponce-Mañe,
    • José Mario Vargas-Guerrero,
    • Rana Elias,
    • and Arturo Marí-Ordóñez
    Genome Res. March 2025 35: 522-544; Published in Advance March 4, 2025, doi:10.1101/gr.279532.124
    ...to investigate Spirodela TE-derived sRNAs, TE epigenetic marks, and the genetic composition and expression of silencing pathways. Although TE regulatory mechanisms might differ between the two species given their evolutionary distance (Supplemental Fig. S2), we choose Arabidopsis as its silencing pathways...
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  2. Research: Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites
    • Kurt Patterson,
    • Farbod Shavarebi,
    • Christophe Magnan,
    • Ivan Chang,
    • Xiaojie Qi,
    • Pierre Baldi,
    • Virginia Bilanchone,
    • and Suzanne B. Sandmeyer
    Genome Res. August 2019 29: 1298-1309; Published in Advance June 27, 2019, doi:10.1101/gr.240861.118
    ...and organization are similar to those of simple retroviruses such as Moloney murine leukemia virus (MoMLV) (Sandmeyer et al. 2015). Ty3 expression is induced in haploid mating cells. Polyprotein Gag3 structural and Gag3-Pol3 catalytic protein precursors together with RNA assemble into virus-like particles (VLPs...
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  3. Research: A genome-wide transcriptome and translatome analysis of Arabidopsis transposons identifies a unique and conserved genome expression strategy for Ty1/Copia retroelements
    • Stefan Oberlin,
    • Alexis Sarazin,
    • Clément Chevalier,
    • Olivier Voinnet,
    • and Arturo Marí-Ordóñez
    Genome Res. September 2017 27: 1549-1562; Published in Advance August 7, 2017, doi:10.1101/gr.220723.117
    ...map to the shGAG subgenomic mRNA in a met1 epiRIL A study of EVD in an epigenetic recombinant inbred line (epiRIL epi15 F11) (Reinders et al. 2009;Marí-Ordóñez et al. 2013) suggested how de novo integrated and active transposon copies trigger a Figure 5. Genome-wide identification of Ty1/Copia sh...
  4. Research: A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
    • Alexandros Bousios,
    • Concepcion M. Diez,
    • Shohei Takuno,
    • Vojtech Bystry,
    • Nikos Darzentas,
    • and Brandon S. Gaut
    Genome Res. February 2016 26: 226-237; Published in Advance December 2, 2015, doi:10.1101/gr.193763.115
    ...(C) per nucleotide of the full-length (FL), LTR, or INT domain of all 6456 Sireviruses based on the leaf library. Epigenetic si lencing of maize LTR retrotransposons Genome Research 227 www..org these M_siRNAs tended to match Sireviruses exclusively, because only 0.1% mapped to both Sireviruses...
  5. Review: The structure, function, and evolution of plant centromeres
    • Matthew Naish and
    • Ian R. Henderson
    Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
    ...in a senp6 SUMO-protease mutant, which causes them to be degraded via p97 (Mitra et al. 2020; van den Berg et al. 2023). Although CENH3 overexpression has not been reported in Arabidopsis, the cenh3-4 splice acceptor allele shows a 10-fold reduction of CENH3 mRNA and significantly reduced protein...
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