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  1. ...” paralogs. Unfortunately, the rule-based approach used by INPARANOID assumes that pairwise comparison is limited to comparisons between two species. EGO (previously named TOGA; Lee et al. 2002 ) applies a COG-based approach to the TIGR gene indices (Quackenbush et al. 2000 , 2001 ), and this method...
  2. .... ↵ Lee Y. , Sultana R. , Pertea G. , Cho J. , Karamycheva S. , Tsai J. , Parvizi B. , Cheung F. , Antonescu V. , White J. , et al. ( 2002 ) Cross-referencing eukaryotic s: TIGR orthologous gene alignments (TOGA). Genome Res. 12 : 493 – 502 . ↵ Martin G.R. ( 1981 ) Isolation of a pluripotent cell line...
  3. ...as for the delineation of gene boundaries and alternatively spliced isoforms. Footnotes [Supplemental material is available online at www.genome.org. The sequence data from this study have been submitted to GenBank under accession nos. CF272536–CF272733.] ↵ 3 Ludwig Institute for Cancer Research...
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