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Research: The subgenomes show asymmetric expression of alleles in hybrid lineages of Megalobrama amblycephala × Culter alburnus
- Li Ren,
- Wuhui Li,
- Qinbo Qin,
- He Dai,
- Fengming Han,
- Jun Xiao,
- Xin Gao,
- Jialin Cui,
- Chang Wu,
- Xiaojing Yan,
- Guoliang Wang,
- Guiming Liu,
- Jia Liu,
- Jiaming Li,
- Zhong Wan,
- Conghui Yang,
- Chun Zhang,
- Min Tao,
- Jing Wang,
- Kaikun Luo,
- Shi Wang,
- Fangzhou Hu,
- Rurong Zhao,
- Xuming Li,
- Min Liu,
- Hongkun Zheng,
- Rong Zhou,
- Yuqin Shu,
- Yude Wang,
- Qinfeng Liu,
- Chenchen Tang,
- Wei Duan,
- and Shaojun Liu
Genome Res. November 2019 29: 1805-1815; Published in Advance October 24, 2019, doi:10.1101/gr.249805.119
...allopolyploid plants and a few animals (Adams 2007; Liu et al. 2016). These changes derived from hybridization and polyploidization lead to bias in homoeolog expression and expression dominance (Rapp et al. 2009; Yoo et al. 2013). Such asymmetric expression is related to the imbalanced expression...
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METHODS: RHO—Radiation Hybrid Ordering
- Amir Ben-Dor,
- Benny Chor,
- and Dan Pelleg
Genome Res. March 1, 2000 10: 365-378; doi:10.1101/gr.10.3.365
...of hybrids and radiation level vs. retention probability) on the quality of the resulting maps, we wrote a simulator that mimics the actual experiment performed in the laboratory, using the accepted statistical model of the RH experiment (Lange et al. 1995; Ben-Dor and Chor 1997). The following assumptions...
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ARTICLES: Experimental design and error detection for polyploid radiation hybrid mapping.
- K L Lunetta,
- M Boehnke,
- K Lange,
- and D R Cox
Genome Res. September 1995 5: 151-163; doi:10.1101/gr.5.2.151
...hybrids. Ann. Hum. Genet. 56 : 119 – 144 . Lange, K., , Boehnke, M. , Cox, D.R. , Lunetta. K.L. Lange, K., Boehnke, M. Cox, D.R. and Lunetta. K.L. 1995 . Statistical methods for polyploid radiation hybrid mapping. Genome Res. (this issue) . Lunetta, K.L. , Boehnke. M. Lunetta, K.L. and Boehnke. M. 1994...
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LETTER: A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-qun Chen,
- Naoya Yuhki,
- Deborah Hirschmann,
- Marilyn Menotti-Raymond,
- and Stephen J. O'Brien
Genome Res. May 1, 2000 10: 691-702; doi:10.1101/gr.10.5.691
...) Statistical methods for multipoint radiation hybrid mapping. Am. J. Hum. Genet. 49 : 1174 – 1188 . ↵ Carver E.A. , Stubbs L. ( 1997 ) Zooming in on the human-mouse comparative map: Genome conservation re-examined on a high-resolution scale. Genome Res. 7 : 1123 – 1137 . ↵ Chen Z.Q. , Lautenberger J.A. , Lyons...
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METHODS: A Fast and Scalable Radiation Hybrid Map Construction and Integration Strategy
- Richa Agarwala,
- David L. Applegate,
- Donna Maglott,
- Gregory D. Schuler,
- and Alejandro A. Schäffer
Genome Res. March 1, 2000 10: 350-364; doi:10.1101/gr.10.3.350
...A Fast and Scalable Radiation Hybrid Map Construction and Integration Strategy Richa Agarwala 1 , David L. Applegate 2 , Donna Maglott 1 , Gregory D. Schuler 1 and Alejandro A. Schäffer 1 , 3 1National Center...
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RESEARCH: An STS-Based Radiation Hybrid Map of the Human Genome
- Elizabeth A. Stewart,
- Kathleen B. McKusick,
- Amita Aggarwal,
- Ewa Bajorek,
- Shannon Brady,
- Angela Chu,
- Nicole Fang,
- David Hadley,
- Mark Harris,
- Sami Hussain,
- Richard Lee,
- Annu Maratukulam,
- Kyle O’Connor,
- Shanti Perkins,
- Mark Piercy,
- Fawn Qin,
- Tim Reif,
- Carla Sanders,
- Xiaohong She,
- Wei-Lin Sun,
- Poroshat Tabar,
- Susan Voyticky,
- Sid Cowles,
- Jian-Bing Fan,
- Chris Mader,
- John Quackenbush,
- Richard M. Myers,
- and David R. Cox
Genome Res. May 1, 1997 7: 422-433; doi:10.1101/gr.7.5.422
...such reagent is the TNG panel of whole- RHs generated at the Stanford Human Genome Center. This reagent contains sufficient radiation-induced chromosomal breaks to generate high-confidence 100-kb maps ( Lunetta et al. 1996 ). Further studies with these TNG hybrids, along with the development of statistical...
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RESOURCE: The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
- Bhanu P. Chowdhary,
- Terje Raudsepp,
- Srinivas R. Kata,
- Glenda Goh,
- Lee V. Millon,
- Veronica Allan,
- François Piumi,
- Gérard Guérin,
- June Swinburne,
- Matthew Binns,
- Teri L. Lear,
- Jim Mickelson,
- James Murray,
- Douglas F. Antczak,
- James E. Womack,
- and Loren C. Skow
Genome Res. April 1, 2003 13: 742-751; doi:10.1101/gr.917503
...The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes Bhanu P. Chowdhary 1 , 10 , Terje Raudsepp 1 , Srinivas R. Kata 2 , Glenda Goh 1 , Lee V. Millon 3 , Veronica...
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LETTER: Extensive Conservation of Sex Chromosome Organization Between Cat and Human Revealed by Parallel Radiation Hybrid Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-Qun Chen,
- Jill Pecon-Slattery,
- and Stephen J. O'Brien
Genome Res. December 1, 1999 9: 1223-1230; doi:10.1101/gr.9.12.1223
...for polyploid radiation hybrid mapping. Genome Res. 5 : 136 – 150 . ↵ Lyons L.A. , Laughlin T.F. , Jenkins N. , Copeland N. , Womack J.E. , O'Brien S.J. ( 1997 ) Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian s. Nat. Genet. 15 : 47 – 56 . ↵ Mazeyrat S. , Saut N. , Sargent C...
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RESEARCH: A High-Density Integrated Genetic Linkage and Radiation Hybrid Map of the Laboratory Rat
- Robert G. Steen,
- Anne E. Kwitek-Black,
- Christopher Glenn,
- Jo Gullings-Handley,
- William Van Etten,
- O. Scott Atkinson,
- Diane Appel,
- Simon Twigger,
- Melanie Muir,
- Tim Mull,
- Mary Granados,
- Mushira Kissebah,
- Kerri Russo,
- Robbin Crane,
- Michael Popp,
- Marc Peden,
- Tara Matise,
- Donna M. Brown,
- Jian Lu,
- Stephen Kingsmore,
- Peter J. Tonellato,
- Steve Rozen,
- Donna Slonim,
- Peter Young,
- Margit Knoblauch,
- Abraham Provoost,
- Detlev Ganten,
- Steven D. Colman,
- Jonathan Rothberg,
- Eric S. Lander,
- and Howard J. Jacob
Genome Res. June 1, 1999 9: AP1-AP8; Published in Advance May 21, 1999, doi:10.1101/gr.9.6.AP1
.... ↵ Lunetta K.L. , Boehnke M. , Lange K. , Cox D.R. ( 1995 ) Experimental design and error detection for polyploid radiation hybrid mapping. Genome Res. 5 : 151 – 163 . ↵ Matise T. , Perlin M. , Chakravarti A. ( 1994 ) Automated construction of genetic linkage maps using an expert system (multi-map): A human...
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ARTICLE: Hybrid selection as a method of increasing mapping power for radiation hybrids.
- H B Jones
Genome Res. August 1996 6: 761-769; doi:10.1101/gr.6.8.761
.... K.L. 1995 . Statistical analysis for polyploid radiation hybrid mapping. Genome Res. 5 : 136 – 150 . Lawrence, S., , Morton, N.E. , Cox. D.R. Lawrence, S., Morton, N.E. and Cox. D.R. 1991 . Radiation hybrid mapping. Proc. Natl. Acad. Sci. 88 : 7477 – 7480 . Leach, R.J. , O'Connell. P. Leach, R...

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