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Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...function and links to practical research tools – Tools oriented specifically toward gene regulation, which allow reliable data mining, such as the excellent Gene Transcription Regulation Database (Kolmykov et al. 2021), the main advantage of which is seamless integration of ChIP-seq, ChIP-exo, DNase...
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Review: Leveraging the power of long reads for targeted sequencing
- Shruti V. Iyer,
- Sara Goodwin,
- and William Richard McCombie
Genome Res. November 2024 34: 1701-1718; doi:10.1101/gr.279168.124
...-read target enrichment (Hodges et al. 2007; Turner et al. 2009; Mertes et al. 2011; Altmüller et al. 2014; Ballester et al. 2016) and typically rely on multiplexed PCR amplification (Jones et al. 2008; Tewhey et al. 2009) or oligonucleotide-based DNA hybridization capture (Albert et al. 2007; Hodges et al...
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