Searching journal content for articles similar to Laan et al. 5 (1): 13.

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  1. Method: High-resolution genotype-free mapping of genetic variation with CRI-SPA-Map
    • Sheila Lutz,
    • Megan Lawler,
    • Samuel Amidon,
    • and Frank W Albert
    Genome Res. March 23, 2026 gr.281514.125; Published in Advance March 23, 2026, doi:10.1101/gr.281514.125
    ...in regions that are hard to genotype, such as 415 repetitive regions of the . Second, CRI-SPA-Map has high resolution due to short 416 introduced donor DNA tracts in local isolates and tracts that terminate near the targeted ORF in 417 distal isolates. Resolution can be further increased by targeting...
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  2. Method: High-resolution simulations of chromatin folding at genomic rearrangements in malignant B cells provide mechanistic insights into proto-oncogene deregulation
    • Daniel Rico,
    • Daniel Kent,
    • Nefeli Karataraki,
    • Aneta Mikulasova,
    • Rolando Berlinguer-Palmini,
    • Brian A. Walker,
    • Biola M. Javierre,
    • Lisa J. Russell,
    • and Chris A. Brackley
    Genome Res. July 2022 32: 1355-1366; Published in Advance July 21, 2022, doi:10.1101/gr.276028.121
    ...) (Dixon et al. 2012). These are contiguous chromosome regions which show enriched self-interactions and are thought to be associated with cis-regulatory mechanisms; they are often bounded by binding sites for the CCCTC-binding factor CTCF (Rao et al. 2014). ChIP-seq profiling of histone modifications...
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  3. Research: A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing
    • Konstantin Licht,
    • Utkarsh Kapoor,
    • Fabian Amman,
    • Ernesto Picardi,
    • David Martin,
    • Prajakta Bajad,
    • and Michael F. Jantsch
    Genome Res. September 2019 29: 1453-1463; Published in Advance August 19, 2019, doi:10.1101/gr.242636.118
    ...RNA-translation efficiency, or proteins associated with the targeted RNAs (Bass 2002; Tajaddod et al. 2015; Nishikura 2016; Licht et al. 2019).A-to-I editing is mediated by adenosine deaminases acting on RNAs (ADARs). In mammals, two catalytically active ADAR enzymes, ADAR (ADAR1) and ADARB1 (ADAR2) are known. Both enzymes...
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  4. Methods: High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • Assaf Weiner,
    • Amanda Hughes,
    • Moran Yassour,
    • Oliver J. Rando,
    • and Nir Friedman
    Genome Res. January 2010 20: 90-100; Published in Advance October 21, 2009, doi:10.1101/gr.098509.109
    ...High-resolution nucleosome mapping reveals transcription-dependent promoter packaging Assaf Weiner 1 , Amanda Hughes 2 , Moran Yassour 1 , 3 , Oliver J. Rando 2 , 5 and Nir Friedman 1 , 4 , 5 1 School of Computer...
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  5. Resource: The pig X and Y Chromosomes: structure, sequence, and evolution
    • Benjamin M. Skinner,
    • Carole A. Sargent,
    • Carol Churcher,
    • Toby Hunt,
    • Javier Herrero,
    • Jane E. Loveland,
    • Matt Dunn,
    • Sandra Louzada,
    • Beiyuan Fu,
    • William Chow,
    • James Gilbert,
    • Siobhan Austin-Guest,
    • Kathryn Beal,
    • Denise Carvalho-Silva,
    • William Cheng,
    • Daria Gordon,
    • Darren Grafham,
    • Matt Hardy,
    • Jo Harley,
    • Heidi Hauser,
    • Philip Howden,
    • Kerstin Howe,
    • Kim Lachani,
    • Peter J.I. Ellis,
    • Daniel Kelly,
    • Giselle Kerry,
    • James Kerwin,
    • Bee Ling Ng,
    • Glen Threadgold,
    • Thomas Wileman,
    • Jonathan M.D. Wood,
    • Fengtang Yang,
    • Jen Harrow,
    • Nabeel A. Affara,
    • and Chris Tyler-Smith
    Genome Res. January 2016 26: 130-139; Published in Advance November 11, 2015, doi:10.1101/gr.188839.114
    ..., and thereby to reveal mechanisms underlying pig X and Y Chromosome evolution. Footnotes ↵ 5 Joint first authors [Supplemental material is available for this article.] Article published online before print. Article, supplemental material, and publication date are at http...
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  6. Letter: High-resolution analysis of epigenetic changes associated with X inactivation
    • Hendrik Marks,
    • Jennifer C. Chow,
    • Sergei Denissov,
    • Kees-Jan Françoijs,
    • Neil Brockdorff,
    • Edith Heard,
    • and Hendrik G. Stunnenberg
    Genome Res. August 2009 19: 1361-1373; Published in Advance July 6, 2009, doi:10.1101/gr.092643.109
    ...populations and hybridized to the same high-resolution microarrays. The genomic region analyzed was a ;15 Mb segment centered around the X-inactivation center (Xic) ( built MM9 95–109 Mb), which represents ;10% of the X chromosome. Supplemental Figure S1 and the supporting Supplementalmaterial document...
  7. Research: Human long intrinsically disordered protein regions are frequent targets of positive selection
    • Arina Afanasyeva,
    • Mathias Bockwoldt,
    • Christopher R. Cooney,
    • Ines Heiland,
    • and Toni I. Gossmann
    Genome Res. July 2018 28: 975-982; Published in Advance June 1, 2018, doi:10.1101/gr.232645.117
    ...for pmemd simulations included in the AMBER 14 software package (Salomon-Ferrer et al. 2013). A high-resolution three-dimensional structure of human interleukin 21 (IL21) resolved by heteronuclear NMR spectroscopy (PDB code: 2OQP) was used (Bondensgaard et al. 2007).Polymorphism statistics, DFE, and Mc...
  8. LETTER: A high-resolution map of nucleosome positioning on a fission yeast centromere
    • Jun S. Song,
    • Xingkun Liu,
    • X. Shirley Liu,
    • and Xiangwei He
    Genome Res. July 2008 18: 1064-1072; Published in Advance April 14, 2008, doi:10.1101/gr.075374.107
    ...A high-resolution map of nucleosome positioning on a fission yeast centromere Jun S. Song 1 , 2 , 4 , Xingkun Liu 3 , 4 , X. Shirley Liu 1 , and Xiangwei He 3 , 5 1 Department of Biostatistics and Computational Biology, Dana...
  9. Methods: Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion
    • Jon Reinders,
    • Céline Delucinge Vivier,
    • Grégory Theiler,
    • Didier Chollet,
    • Patrick Descombes,
    • and Jerzy Paszkowski
    Genome Res. March 2008 18: 469-476; Published in Advance January 24, 2008, doi:10.1101/gr.7073008
    ...Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion Jon Reinders 1 , 3 , Céline Delucinge Vivier 2 , Grégory Theiler 1 , Didier Chollet 2 , Patrick Descombes 2 , and Jerzy Paszkowski 1...
  10. Method: Centromere reference models for human chromosomes X and Y satellite arrays
    • Karen H. Miga,
    • Yulia Newton,
    • Miten Jain,
    • Nicolas Altemose,
    • Huntington F. Willard,
    • and W. James Kent
    Genome Res. April 2014 24: 697-707; Published in Advance February 5, 2014, doi:10.1101/gr.159624.113
    ...andWillard 1995; Roizès 2006), and in whole- data from diploid s; accordingly, it is difficult to infer the long-range sequence organization and assign sequence variants to a single array. The X and Y chromosomes, represented as haploid arrays in the male , offer a unique opportunity a for high-resolution...
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