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Research: A global network of coexisting microbes from environmental and whole-genome sequence data
- Samuel Chaffron,
- Hubert Rehrauer,
- Jakob Pernthaler,
- and Christian von Mering
Genome Res. July 2010 20: 947-959; Published in Advance May 10, 2010, doi:10.1101/gr.104521.109
...this matrix for any non-random assortment of OTUs to environments, which would manifest itself as groups of OTUs observed together more often than expected by chance. Our underlying model is that of global, random dispersal of lineages across environments (Harvey et al. 1983; Finlay 2002; Kunin et al...
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Research: Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
- David T. Pride,
- Christine L. Sun,
- Julia Salzman,
- Nitya Rao,
- Peter Loomer,
- Gary C. Armitage,
- Jillian F. Banfield,
- and David A. Relman
Genome Res. January 2011 21: 126-136; Published in Advance December 13, 2010, doi:10.1101/gr.111732.110
...of the predominant features of oral streptococcal adaptive immune repertoires. We analyzed a total of 6859 CRISPR bearing reads and 427,917 bacterial 16S rRNA gene sequences. We found a core (ranging from 7% to 22%) of shared CRISPR spacers that remained stable over time within each subject, but nearly a third...

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