Searching journal content for articles similar to Kungulovski et al. 24 (11): 1842.

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  1. Method: Kinetic measurement of gene-specific RNA polymerase II transcription elongation rates
    • Haiyue Liu and
    • Lea H. Gregersen
    Genome Res. November 2025 35: 2550-2562; Published in Advance October 22, 2025, doi:10.1101/gr.280852.125
    ...-associated factors and histone modifications. Specifically, faster RNAPII elongation is associated with increased gene body occupancy of SUPT5H and enrichment of active histone marks such as H3K36me3, H3K79me2, and H3K20me1. Conversely, high ZC3H4 binding is associated with reduced RNAPII elongation rates...
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  2. Perspective: Epigenomics and the structure of the living genome
    • Nir Friedman and
    • Oliver J. Rando
    Genome Res. October 2015 25: 1482-1490; doi:10.1101/gr.190165.115
    ...folding, as, for example, histone acetylation interfereswith folding of nucleosome arrays into compact fibers in vitro (Shahbazian and Grunstein 2007). More complex interactions with chromosome folding are also likely, as modification-specific binding proteins or complexes often have the ability to bind...
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  3. Article: Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing
    • Jung-Hyun Kim,
    • Thomas Ebersole,
    • Natalay Kouprina,
    • Vladimir N. Noskov,
    • Jun-Ichirou Ohzeki,
    • Hiroshi Masumoto,
    • Brankica Mravinac,
    • Beth A. Sullivan,
    • Adam Pavlicek,
    • Sinisa Dovat,
    • Svetlana D. Pack,
    • Yoo-Wook Kwon,
    • Patrick T. Flanagan,
    • Dmitri Loukinov,
    • Victor Lobanenkov,
    • and Vladimir Larionov
    Genome Res. April 2009 19: 533-544; Published in Advance January 13, 2009, doi:10.1101/gr.086496.108
    ...8 (Supplemental Fig. S8). Interestingly, gamma-satellite DNA was enriched for histone modifications specific for both transcriptionally permissive and compact chromatin. Because of a repetitive structure of the arrays, such a pattern of enrichment indicates the alternation of different domains...
  4. Research: Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
    • Valer Gotea,
    • Axel Visel,
    • John M. Westlund,
    • Marcelo A. Nobrega,
    • Len A. Pennacchio,
    • and Ivan Ovcharenko
    Genome Res. May 2010 20: 565-577; Published in Advance April 2, 2010, doi:10.1101/gr.104471.109
    ...of the corresponding TFs, has been associated with various epigeneticmodifications, such as the acetylation of the core histone 3 (H3) and the monomethylation of H3K4 (Roh et al. 2005, 2007; Heintzman et al. 2007). To test if HCT-containing regions reflect epigenetic modifications specific to regulatory elements, we...
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