Searching journal content for articles similar to Kuchenbauer et al. 18 (11): 1787.

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  1. Method: Next-generation sequencing identifies the natural killer cell microRNA transcriptome
    • Todd A. Fehniger,
    • Todd Wylie,
    • Elizabeth Germino,
    • Jeffrey W. Leong,
    • Vincent J. Magrini,
    • Sunita Koul,
    • Catherine R. Keppel,
    • Stephanie E. Schneider,
    • Daniel C. Koboldt,
    • Ryan P. Sullivan,
    • Michael E. Heinz,
    • Seth D. Crosby,
    • Rakesh Nagarajan,
    • Giridharan Ramsingh,
    • Daniel C. Link,
    • Timothy J. Ley,
    • and Elaine R. Mardis
    Genome Res. November 2010 20: 1590-1604; Published in Advance October 8, 2010, doi:10.1101/gr.107995.110
    ...Next-generation sequencing identifies the natural killer cell microRNA transcriptome Todd A. Fehniger 1 , 4 , Todd Wylie 2 , 4 , Elizabeth Germino 1 , Jeffrey W. Leong 1 , Vincent J. Magrini 2 , Sunita Koul 3 , Catherine R...
  2. Research: Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    • Stacia K. Wyman,
    • Emily C. Knouf,
    • Rachael K. Parkin,
    • Brian R. Fritz,
    • Daniel W. Lin,
    • Lucas M. Dennis,
    • Michael A. Krouse,
    • Philippa J. Webster,
    • and Muneesh Tewari
    Genome Res. September 2011 21: 1450-1461; Published in Advance August 3, 2011, doi:10.1101/gr.118059.110
    ...; 8Department of Medicine, University of Washington, Seattle, Washington 98195, USA ↵ 9 These authors contributed equally to this work. ↵ 10 Present address: Illumina, Inc., 9865 Towne Centre Drive, San Diego, CA 92121, USA. Abstract Modification of microRNA...
  3. Perspective: Functional transcriptomics in the post-ENCODE era
    • Jonathan M. Mudge,
    • Adam Frankish,
    • and Jennifer Harrow
    Genome Res. December 2013 23: 1961-1973; Published in Advance October 30, 2013, doi:10.1101/gr.161315.113
    ...), as well as more recently discovered categories including microRNAs (Kozomara andGriffiths-Jones 2011) and piwi-interacting RNAs (Siomi et al. 2011). Small RNA genes are frequently found within the exons or introns of larger transcripts (both proteincoding and lncRNA), which can be regarded as ‘‘host...
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  4. Research: Alternative polyadenylation drives oncogenic gene expression in pancreatic ductal adenocarcinoma
    • Swati Venkat,
    • Arwen A. Tisdale,
    • Johann R. Schwarz,
    • Abdulrahman A. Alahmari,
    • H. Carlo Maurer,
    • Kenneth P. Olive,
    • Kevin H. Eng,
    • and Michael E. Feigin
    Genome Res. March 2020 30: 347-360; Published in Advance February 6, 2020, doi:10.1101/gr.257550.119
    ...across multiple tumor types, they also detected tumor type–specific events (Xue et al. 2018). Additionally, differential 3′-UTR processing has been shown to drive tissue-specific gene expression (Lianoglou et al. 2013). However, there has been no in-depth single-cancer analysis with a sufficiently large...
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  5. Method: Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation
    • Qianru Li,
    • Haiwang Yang,
    • Emily K. Stroup,
    • Hongbin Wang,
    • and Zhe Ji
    Genome Res. March 2022 32: 545-557; Published in Advance February 22, 2022, doi:10.1101/gr.276139.121
    ...(Supplemental Fig. S3I). For example, the reads in microRNAs were located in mature microRNA regions (Supplemental Fig. S3D) and may represent the binding of RNA-induced silencing complex (RISC). The reads in H/ACA type snoRNAs were mapped to the H-box and ACA-box (Supplemental Fig. S3E). These nonribosomal...
  6. Methods: Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
    • Michiel J.L. de Hoon,
    • Ryan J. Taft,
    • Takehiro Hashimoto,
    • Mutsumi Kanamori-Katayama,
    • Hideya Kawaji,
    • Mitsuoki Kawano,
    • Mami Kishima,
    • Timo Lassmann,
    • Geoffrey J. Faulkner,
    • John S. Mattick,
    • Carsten O. Daub,
    • Piero Carninci,
    • Jun Kawai,
    • Harukazu Suzuki,
    • and Yoshihide Hayashizaki
    Genome Res. February 2010 20: 257-264; Published in Advance January 5, 2010, doi:10.1101/gr.095273.109
    ..., Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, et al. 2008. In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Res 18: 1787–1797. Kuhn RM, Karolchik D, Zweig AS,Wang T, Smith KE, RosenbloomKR, Rhead B, Raney BJ, Pohl A, PheasantM, et...
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  7. PERSPECTIVE: Genomics of the fungal kingdom: Insights into eukaryotic biology
    • James E. Galagan,
    • Matthew R. Henn,
    • Li-Jun Ma,
    • Christina A. Cuomo,
    • and Bruce Birren
    Genome Res. December 2005 15: 1620-1631; doi:10.1101/gr.3767105
    .... As described above, RNA silencing has been utilized in C. albicans to identify essential genes, and RNA-silencing experimental protocols have been developed for a host of other non-yeast fungi. Curiously, no endogenous microRNAs have yet been reported in fungi, although there is some evidence for antisense...
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