Searching journal content for articles similar to Kuang et al. 27 (1): 145.

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  1. Resource: Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
    • José Carlos Montañés,
    • Marta Huertas,
    • Simone G. Moro,
    • William R. Blevins,
    • Mercè Carmona,
    • José Ayté,
    • Elena Hidalgo,
    • and M. Mar Albà
    Genome Res. June 2022 32: 1215-1227; Published in Advance May 26, 2022, doi:10.1101/gr.276516.121
    ...(fission yeast) retains many of the splicing features observed in humans and is thus an excellent model to study the basic mechanisms of splicing. Nearly half the genes contain introns, but the impact of alternative splicing in gene regulation and proteome diversification remains largely unexplored. Here...
  2. Research: Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast
    • Danny A. Bitton,
    • Sophie R. Atkinson,
    • Charalampos Rallis,
    • Graeme C. Smith,
    • David A. Ellis,
    • Yuan Y.C. Chen,
    • Michal Malecki,
    • Sandra Codlin,
    • Jean-François Lemay,
    • Cristina Cotobal,
    • François Bachand,
    • Samuel Marguerat,
    • Juan Mata,
    • and Jürg Bähler
    Genome Res. June 2015 25: 884-896; Published in Advance April 16, 2015, doi:10.1101/gr.185371.114
    ..., physiological, and genetic perturbations in the fission yeast Schizosaccharomyces pombe. Approximately 47% of the S. pombe genes contain annotated introns, and the splicing machinery is conserved (Käufer and Potashkin 2000). Limited evidence suggests alternative splicing via intron retention (Moldón et al. 2008...
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  3. Research: Long-read sequencing of nascent RNA reveals coupling among RNA processing events
    • Lydia Herzel,
    • Korinna Straube,
    • and Karla M. Neugebauer
    Genome Res. July 2018 28: 1008-1019; Published in Advance June 14, 2018, doi:10.1101/gr.232025.117
    ...and determine alternative splicing patterns (Schor et al. 2013; Dujardin et al. 2014; Fong et al. 2014; Saldi et al. 2016). The mechanisms underlying coordination between RNA processing and transcription are being intensely investigated.Recent efforts have focused on determining the in vivo dynamics of gene...
  4. ARTICLE: Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • Timothy Ravasi,
    • Harukazu Suzuki,
    • Ken C. Pang,
    • Shintaro Katayama,
    • Masaaki Furuno,
    • Rie Okunishi,
    • Shiro Fukuda,
    • Kelin Ru,
    • Martin C. Frith,
    • M. Milena Gongora,
    • Sean M. Grimmond,
    • David A. Hume,
    • Yoshihide Hayashizaki,
    • and John S. Mattick
    Genome Res. January 2006 16: 11-19; Published in Advance December 12, 2005, doi:10.1101/gr.4200206
    ...et al. 2000 ; Charlier et al. 2001 ; Wolf et al. 2001 ). This indicates that there may be an additional level of complexity in non-coding RNAs, since (if the observed alternative splicing is meaningful and not some type of tissue-specific noise) it suggests that not only are different ncRNA isoforms...
  5. Method: A versatile type VI CRISPR-based approach for targeted m6A demethylation in mRNAs
    • Panagiotis G. Adamopoulos,
    • Konstantina Athanasopoulou,
    • and Andreas Scorilas
    Genome Res. January 2026 36: 169-182; Published in Advance December 11, 2025, doi:10.1101/gr.280476.125
    ...in various organisms, including fission yeast, plants, and mammalian cells (Abudayyeh et al. 2016; Gupta et al. 2022). Besides the identification of several Cas13 enzymes with different features, including Cas13b and Cas13d (CasRx), findings have also confirmed that specific mutations in Cas13 can produce...
  6. Method: Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells
    • Arshad H. Khan,
    • Andy Lin,
    • Richard T. Wang,
    • Joshua S. Bloom,
    • Kenneth Lange,
    • and Desmond J. Smith
    Genome Res. October 2020 30: 1458-1467; Published in Advance September 2, 2020, doi:10.1101/gr.262204.120
    ...of yeast segregants. Nature 464: 1039–1042. doi:10.1038/nature08923. ↵Eksi R, Li HD, Menon R, Wen Y, Omenn GS, Kretzler M, Guan Y. 2013. Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data. PLoS Comput Biol 9: e1003314. doi:10.1371/journal...
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