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  1. .... , Schmitz, J. ( 2007 ) Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs) Genome Res. 17 : 1139 – 1145 . ↵ Long, M. , Betran, E. , Thornton, K. , Wang, W. ( 2003 ) The origin of new genes: Glimpses from the young and old . Nat. Rev. Genet. 4 : 865 – 875 . ↵ Ludwig, A...
  2. ...related to other L1s within that species than to L1s in other species (data not shown). Other old non-LTR elements and associated SINEs that are mammalian-wide, and represented in Monodelphis , include L2A and L2B, MIR and MIR3, and L3 (CR-1). Both L2 and L3 have been significantly more prolific...
  3. ...regions of paralogy were identified (indicated by Roman numerals), and each region was aligned using the BESTFIT alignment program (GCG software package). The position and identity of exons and other repeat elements are illustrated schematically above the miropeat alignment. Similar results were obtained...
  4. ..., also generated with GESTALT (Long Interspersed Elements [LINEs], green; Alus, red; Mammalian-wide Interspersed Repeats [MIRs], purple; all other repeats including retroviruses, Long Terminal Repeats [LTRs], Mammalian Apparent LTR-retrotransposons [MaLRs], etc., brown). The age of each element...
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