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Method: Diffusion-enhanced characterization of 3D chromatin structure reveals its linkage to gene regulatory networks and the interactome
- Yueying He,
- Yue Xue,
- Jingyao Wang,
- Yupeng Huang,
- Lu Liu,
- Yanyi Huang,
- and Yi Qin Gao
Genome Res. August 2023 33: 1354-1368; Published in Advance July 25, 2023, doi:10.1101/gr.277737.123
...with higher probability of (1) gene fusion, (2) gene coexpression, and (3) interactions between the proteins coded by the two genes. In particular, the latter two occur in a cell type–specific manner and thus show a possible passage of chromatin 3D structural and networking information to the downstream...
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Letter: Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes
- Michael Y. Tolstorukov,
- Peter V. Kharchenko,
- Joseph A. Goldman,
- Robert E. Kingston,
- and Peter J. Park
Genome Res. June 2009 19: 967-977; Published in Advance February 26, 2009, doi:10.1101/gr.084830.108
...reflects the presence of CpG islands and increased GC content in the vicinity of many human genes ( Lander et al. 2001 ), where ∼60% of the H2A.Z nucleosomes are located ( Table 1 ). View this table: In this window In a new window Table 1. Occurrences of H2A.Z and H3K4me3 predicted nucleosomes...

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