Searching journal content for articles similar to Koren et al. 20 (6): 781.

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  1. Research: Replication timing is regulated by the number of MCMs loaded at origins
    • Shankar P. Das,
    • Tyler Borrman,
    • Victor W.T. Liu,
    • Scott C.-H. Yang,
    • John Bechhoefer,
    • and Nicholas Rhind
    Genome Res. December 2015 25: 1886-1892; Published in Advance September 10, 2015, doi:10.1101/gr.195305.115
    ...AE, Viggiani CJ, Tavaré S, Aparicio OM. 2012. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 148: 99–111. Koren A, Soifer I, Barkai N. 2010. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res 20: 781...
  2. Research: Conservation of replication timing reveals global and local regulation of replication origin activity
    • Carolin A. Müller and
    • Conrad A. Nieduszynski
    Genome Res. October 2012 22: 1953-1962; Published in Advance July 5, 2012, doi:10.1101/gr.139477.112
    ...–111. Koren A, Soifer I, Barkai N. 2010a. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Res 20: 781–790. Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. 2010b. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. PLoS Genet...
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  3. Method: Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells
    • Ariel Gispan,
    • Miri Carmi,
    • and Naama Barkai
    Genome Res. February 2017 27: 310-319; Published in Advance December 27, 2016, doi:10.1101/gr.205849.116
    ...studies, this overexpression was analyzed in the background of rpd3Δ (Mantiero et al. 2011). A compendium of budding yeast mutant profiles To more systematically test our approach, we analyzed a compendium of replication profiles, including most viable budding yeast mutants implicated inDNA replication...
  4. Research: Nascent RNA folding mitigates transcription-associated mutagenesis
    • Xiaoshu Chen,
    • Jian-Rong Yang,
    • and Jianzhi Zhang
    Genome Res. January 2016 26: 50-59; Published in Advance October 30, 2015, doi:10.1101/gr.195164.115
    ...computational analysis is provided in Supplemental Methods. Replication timing DNA replication timing data from yeast (Koren et al. 2010) were analyzed. Details of the computational analysis are provided in Supplemental Methods. Experimental mRNA folding strength data The in vitro mRNA folding strength data...
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