Searching journal content for articles similar to Konkel et al. 26 (5): 649.

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  1. Resource: Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
    • Flavia Angela Maria Maggiolini,
    • Ashley D. Sanders,
    • Colin James Shew,
    • Arvis Sulovari,
    • Yafei Mao,
    • Marta Puig,
    • Claudia Rita Catacchio,
    • Maria Dellino,
    • Donato Palmisano,
    • Ludovica Mercuri,
    • Miriana Bitonto,
    • David Porubský,
    • Mario Cáceres,
    • Evan E. Eichler,
    • Mario Ventura,
    • Megan Y. Dennis,
    • Jan O. Korbel,
    • and Francesca Antonacci
    Genome Res. November 2020 30: 1680-1693; Published in Advance October 22, 2020, doi:10.1101/gr.265322.120
    ...cell lines, including two chimpanzees (Pan troglodytes), two gorillas (Gorilla gorilla), two orangutans (Pongo pygmaeus), and three macaques (two M. mulatta and one M. fascicularis); we used marmoset (Callithrix jacchus) as outgroup when necessary (Fig. 2A; Supplemental Table S5).View larger version...
  2. Research: Embryonic LTR retrotransposons supply promoter modules to somatic tissues
    • Kosuke Hashimoto,
    • Eeva-Mari Jouhilahti,
    • Virpi Töhönen,
    • Piero Carninci,
    • Juha Kere,
    • and Shintaro Katayama
    Genome Res. November 2021 31: 1983-1993; Published in Advance October 21, 2021, doi:10.1101/gr.275354.121
    ...is observed in other primates. There are about 2000–3000 copies of MLT2A in the s of simian primates, including rhesus macaque (Macaca mulatta) and common marmoset (Callithrix jacchus), but not in the s of other primates or mouse (Fig. 3A). This indicates that both MLT2A1 and MLT2A2 were inserted...
  3. Resource: Inversion variants in human and primate genomes
    • Claudia Rita Catacchio,
    • Flavia Angela Maria Maggiolini,
    • Pietro D'Addabbo,
    • Miriana Bitonto,
    • Oronzo Capozzi,
    • Martina Lepore Signorile,
    • Mattia Miroballo,
    • Nicoletta Archidiacono,
    • Evan E. Eichler,
    • Mario Ventura,
    • and Francesca Antonacci
    Genome Res. May 18, 2018 ; Published in Advance May 18, 2018, doi:10.1101/gr.234831.118
    ...larger inversions by FISH analysis of cell lines from multiple individuals of chimpanzee (Pan troglodytes), gorilla (Gorilla gorilla), orangutan (Pongo pygmaeus), and macaque (Macaca mulatta). When necessary, marmoset (Callithrix jacchus) was used as an outgroup species (Supplemental Tables S3, S4...
  4. Research: Transposable elements are the primary source of novelty in primate gene regulation
    • Marco Trizzino,
    • YoSon Park,
    • Marcia Holsbach-Beltrame,
    • Katherine Aracena,
    • Katelyn Mika,
    • Minal Caliskan,
    • George H. Perry,
    • Vincent J. Lynch,
    • and Christopher D. Brown
    Genome Res. October 2017 27: 1623-1633; Published in Advance August 30, 2017, doi:10.1101/gr.218149.116
    .... Results Data generation, quality assessment, and validation We generated RNA-seq and ChIP-seq data from postmortem livers of three or four individuals per species of mouse lemur (Microcebus murinus), bushbaby (Otolemur garnettii), marmoset (Callithrix jacchus), rhesus macaque (Macaca mulatta), chimpanzee...
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  5. Letter: Comparative analysis of Alu repeats in primate genomes
    • George E. Liu,
    • Can Alkan,
    • Lu Jiang,
    • Shaying Zhao,
    • and Evan E. Eichler
    Genome Res. May 2009 19: 876-885; doi:10.1101/gr.083972.108
    ...’s laboratory at Children’s Hospital Oakland Research Institute, Oakland, CA (http://www.chori.org/bacpac/) for the common chimpanzee (Pan troglodytes CH251), the (olive) baboon (Papio anubis RP41), the rhesus macaque (Macaque mulatta CH250), and the common marmoset (Callithrix jacchus CH259), while the lemur...
  6. Research: Noncoding origins of anthropoid traits and a new null model of transposon functionalization
    • Ricardo C.H. del Rosario,
    • Nirmala Arul Rayan,
    • and Shyam Prabhakar
    Genome Res. September 2014 24: 1469-1484; Published in Advance July 20, 2014, doi:10.1101/gr.168963.113
    ...(hg19), three anthropoid primates, Pongo pygmaeus abelii (ponAbe2), Macaca mulatta (rheMac2), and Callithrix jacchus (calJac3), and three nonprimate mammals, Canis familiaris (canFam2), Mus musculus (mm9), and Equus caballus (equCab2), were downloaded from the UCSC Genome Browser (Kent et al. 2002...
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  7. Research: Evolutionary dynamism of the primate LRRC37 gene family
    • Giuliana Giannuzzi,
    • Priscillia Siswara,
    • Maika Malig,
    • Tomas Marques-Bonet,
    • NISC Comparative Sequencing Program,
    • James C. Mullikin,
    • Mario Ventura,
    • and Evan E. Eichler
    Genome Res. January 2013 23: 46-59; Published in Advance October 11, 2012, doi:10.1101/gr.138842.112
    ...), rhesus macaque (Macaca mulatta), common marmoset (Callithrix jacchus), and ring-tailed lemur (Lemur catta) as representatives of great ape, OldWorld monkey, NewWorld monkey, and prosimian lineages, respectively. Mammalian outgroup s included those of Mus musculus (NCBI37/mm9), Rattus norvegicus (Baylor 3...
  8. LETTER: The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
    • John K. Pace II and
    • Cédric Feschotte
    Genome Res. April 2007 17: 422-432; Published in Advance March 5, 2007, doi:10.1101/gr.5826307
    ...members of 11 DNA element families that were present at orthologous positions in human, Rhesus macaque ( Macaca mulatta ), and marmoset ( Callithrix jacchus) , but absent in the galago ( Otolemur garnettii ), a prosimian primate. We were able to identify “empty sites” in the respective orthologous galago...
  9. LETTER: Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage
    • Belen Hurle,
    • Willie Swanson,
    • NISC Comparative Sequencing Program,
    • and Eric D. Green
    Genome Res. March 2007 17: 276-286; Published in Advance January 31, 2007, doi:10.1101/gr.6004607
    ...gorilla ; CHORI-255), orangutan ( Pongo pygmaeus ; CHORI-253), baboon (Papio anubis ; RPCI-41), rhesus macaque ( Macaca mulatta ; CHORI-250), black and white colobus ( Colobus guereza ; CHORI-272), vervet ( Cercopithecus aethiops ; CHORI-252), marmoset ( Callithrix jacchus ; CHORI-259), squirrel monkey...
  10. ARTICLE: Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications
    • Tera Newman and
    • Barbara J. Trask
    Genome Res. May 1, 2003 13: 781-793; doi:10.1101/gr.769003
    ...from GenBank. The 30 genes are distributed among seven species as follows: Pongo pygmaeus (orangutan), eight; Pan troglodytes (chimpanzee), seven; Gorilla gorilla , three; Hylobates lar (gibbon), six; Saimiri scieureus (squirrel monkey, a New World monkey), three; Callithrix jacchus (common marmoset...
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