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Resource: Dynamic transcriptional and chromatin accessibility landscape of medaka embryogenesis
- Yingshu Li,
- Yongjie Liu,
- Hang Yang,
- Ting Zhang,
- Kiyoshi Naruse,
- and Qiang Tu
Genome Res. June 2020 30: 924-937; Published in Advance June 26, 2020, doi:10.1101/gr.258871.119
...lives in small rivers, creeks, and rice paddies and can stand a wide range of temperatures (4°C–40°C) and salinities as shown by their tolerance to brackish water (Inoue and Takei 2002). Additionally, medaka has clearly defined sex chromosomes, and its sex determination mechanism has been intensively...
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ARTICLE: Zebrafish Comparative Genomics and the Origins of Vertebrate Chromosomes
- John H. Postlethwait,
- Ian G. Woods,
- Phuong Ngo-Hazelett,
- Yi-Lin Yan,
- Peter D. Kelly,
- Felicia Chu,
- Hui Huang,
- Alicia Hill-Force,
- and William S. Talbot
Genome Res. December 1, 2000 10: 1890-1902; doi:10.1101/gr.164800
...and Postlethwait 1999 ), and the genetic basis of its sex determination mechanism is as yet unknown. Hsa9 contains DMRT1 , which is homologous to sex determination genes in flies and worms ( Raymond et al. 1999a ). DMRT1 is expressed early in the genital ridge and is in, or very near, chromosome deletions...
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Research: An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
- Elise Parey,
- Alexandra Louis,
- Jérôme Montfort,
- Yann Guiguen,
- Hugues Roest Crollius,
- and Camille Berthelot
Genome Res. September 2022 32: 1685-1697; Published in Advance August 12, 2022, doi:10.1101/gr.276953.122
..., and physiological genomics, illuminating processes such as environmental adaptation, species diversification, social behavior, or sex determination (Rittschof et al. 2014; Capel 2017; Salzburger 2018; Kim et al. 2019; Xie et al. 2019; Greenway et al. 2020). Around two hundred fish species have reference assemblies...
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Resource: A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
- Mats E. Pettersson,
- Christina M. Rochus,
- Fan Han,
- Junfeng Chen,
- Jason Hill,
- Ola Wallerman,
- Guangyi Fan,
- Xiaoning Hong,
- Qiwu Xu,
- He Zhang,
- Shanshan Liu,
- Xin Liu,
- Leanne Haggerty,
- Toby Hunt,
- Fergal J. Martin,
- Paul Flicek,
- Ignas Bunikis,
- Arild Folkvord,
- and Leif Andersson
Genome Res. November 2019 29: 1919-1928; Published in Advance October 24, 2019, doi:10.1101/gr.253435.119
...among teleostsThe chromosome-level assembly allows comparisons of the herring genomic organization with that in other species. We performed pair-wise whole- alignments between the new herring assembly and five other teleosts with chromosome-level assemblies publicly available. These comparisons revealed...
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LETTER: DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya
- Wenli Zhang,
- Xiue Wang,
- Qingyi Yu,
- Ray Ming,
- and Jiming Jiang
Genome Res. December 2008 18: 1938-1943; Published in Advance July 1, 2008, doi:10.1101/gr.078808.108
...-specific fluorescent probe . Biotech. Histochem. 70 : 220 – 233 . ↵ Kondo, M. , Hornung, U. , Nanda, I. , Imai, S. , Sasaki, T. , Shimizu, A. , Asakawa, S. , Hori, H. , Schmid, M. , Shimizu, N. , et al. ( 2006 ) Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka . Genome...
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Research: Epigenetic modification and inheritance in sexual reversal of fish
- Changwei Shao,
- Qiye Li,
- Songlin Chen,
- Pei Zhang,
- Jinmin Lian,
- Qiaomu Hu,
- Bing Sun,
- Lijun Jin,
- Shanshan Liu,
- Zongji Wang,
- Hongmei Zhao,
- Zonghui Jin,
- Zhuo Liang,
- Yangzhen Li,
- Qiumei Zheng,
- Yong Zhang,
- Jun Wang,
- and Guojie Zhang
Genome Res. April 2014 24: 604-615; Published in Advance February 2, 2014, doi:10.1101/gr.162172.113
...for this article.] Mechanisms of sex determination can be broadly divided into two major categories: genetic sex determination (GSD) and environmental sex determination (ESD). In organisms with GSD (often based on sex chromosomes), the primary sex of an individual is determined at the moment of fertilization...
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ARTICLE: Functional Divergence of Two Zebrafish Midkine Growth Factors Following Fish-Specific Gene Duplication
- Christoph Winkler,
- Matthias Schäfer,
- Jutta Duschl,
- Manfred Schartl,
- and Jean-Nicolas Volff
Genome Res. June 2003 13: 1067-1081; Published in Advance May 12, 2003, doi:10.1101/gr.1097503
...by sequence database analysis: several overlapping ESTs from zebrafish and medaka, and one unique genomic sequence in zebrafish ( http://www.ensembl.org/Danio_rerio/blastview , overlapping scaffolds z06s001290 and z06s061315) and T. rubripes (S001533) ( Fig. 2A ). This confirmed that the Mdk proteins...

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