Searching journal content for articles similar to Komura et al. 16 (12): 1575.

Displaying results 1-10 of 95

For checked items

view abstracts
download to citation manager

Select this article
ARTICLE: Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays
- Rui Mei,
- Patricia C. Galipeau,
- Cynthia Prass,
- Anthony Berno,
- Ghassan Ghandour,
- Nila Patil,
- Roger K. Wolff,
- Mark S. Chee,
- Brian J. Reid,
- and David J. Lockhart
Genome Res. August 1, 2000 10: 1126-1137; doi:10.1101/gr.10.8.1126
...Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays Rui Mei 1 , 7 , Patricia C. Galipeau 2 , Cynthia Prass 3 , Anthony Berno 1 , Ghassan Ghandour 4 , Nila Patil 1 , Roger K. Wolff 3...
Select this article
METHODS: Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation
- Shoulian Dong,
- Eugene Wang,
- Linda Hsie,
- Yanxiang Cao,
- Xiaogiong Chen,
- and Thomas R. Gingeras
Genome Res. August 1, 2001 11: 1418-1424; Published in Advance July 12, 2001, doi:10.1101/gr.171101
...that was used to identify the SNPs. A total of 98.7% (74/75) of these SNPs were confirmed using both DNA dideoxynucleotide sequencing and the VDA methodologies. With flexible sample preparation, high-density oligonucleotide arrays can be tailored for even larger scale genome-wide SNP discovery as well...
Select this article
LETTER: Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays
- Jian-Bing Fan,
- Xiaoqiong Chen,
- Marc K. Halushka,
- Anthony Berno,
- Xiaohua Huang,
- Thomas Ryder,
- Robert J. Lipshutz,
- David J. Lockhart,
- and Aravinda Chakravarti
Genome Res. June 1, 2000 10: 853-860; doi:10.1101/gr.10.6.853
.... ↵ Chakravarti A. ( 1999 ) Population genetics–making sense out of sequence. Nature Genet. 21 : 56 – 60 . ↵ Chee M. , Yang R. , Hubbell E. , Berno A. , Huang X.C. , Stern D. , Winkler J. , Lockhart D.J. , Morris M.S. , Fodor S.P. ( 1996 ) Accessing genetic information with high-density DNA arrays. Science 274...
Select this article
Research: Genome-wide depletion of replication initiation events in highly transcribed regions
- Melvenia M. Martin,
- Michael Ryan,
- RyangGuk Kim,
- Anna L. Zakas,
- Haiqing Fu,
- Chii Mei Lin,
- William C. Reinhold,
- Sean R. Davis,
- Sven Bilke,
- Hongfang Liu,
- James H. Doroshow,
- Mark A. Reimers,
- Manuel S. Valenzuela,
- Yves Pommier,
- Paul S. Meltzer,
- and Mirit I. Aladjem
Genome Res. November 2011 21: 1822-1832; Published in Advance August 3, 2011, doi:10.1101/gr.124644.111
...investigates the mechanisms by which mammalian cells coordinate DNA replication with transcription and chromatin assembly. In yeast, DNA replication initiates within nucleosome-free regions, but studies in mammalian cells have not revealed a similar relationship. Here, we have used genome-wide massively...
Select this article
Resource: Analysis of copy number variations among diverse cattle breeds
- George E. Liu,
- Yali Hou,
- Bin Zhu,
- Maria Francesca Cardone,
- Lu Jiang,
- Angelo Cellamare,
- Apratim Mitra,
- Leeson J. Alexander,
- Luiz L. Coutinho,
- Maria Elena Dell'Aquila,
- Lou C. Gasbarre,
- Gianni Lacalandra,
- Robert W. Li,
- Lakshmi K. Matukumalli,
- Dan Nonneman,
- Luciana C. de A. Regitano,
- Tim P.L. Smith,
- Jiuzhou Song,
- Tad S. Sonstegard,
- Curt P. Van Tassell,
- Mario Ventura,
- Evan E. Eichler,
- Tara G. McDaneld,
- and John W. Keele
Genome Res. May 2010 20: 693-703; Published in Advance March 8, 2010, doi:10.1101/gr.105403.110
...al. 2008). Changes in DNA content and structure are a significant source of genetic and phenotypic variation among individuals (Feuk et al. 2006; Beckmann et al. 2007; Conrad and Antonarakis 2007; McCarroll and Altshuler 2007). These types of structural variations ranging from 1 kilobase (kb) to 5...
Select this article
Next-Generation DNA Sequencing/Review: Finding the fifth base: Genome-wide sequencing of cytosine methylation
- Ryan Lister and
- Joseph R. Ecker
Genome Res. June 2009 19: 959-966; Published in Advance March 9, 2009, doi:10.1101/gr.083451.108
...-base detection of DNA methylation A number of methods have been developed for -wide detection of sites of DNA methylation (for review, see Esteller 2007 ; Beck and Rakyan 2008 ). Widely used approaches include enzymatic digestion of methylated DNA followed by hybridization to high-density oligonucleotide arrays...
Select this article
RESOURCE: Whole population, genome-wide mapping of hidden relatedness
- Alexander Gusev,
- Jennifer K. Lowe,
- Markus Stoffel,
- Mark J. Daly,
- David Altshuler,
- Jan L. Breslow,
- Jeffrey M. Friedman,
- and Itsik Pe'er
Genome Res. February 2009 19: 318-326; Published in Advance October 29, 2008, doi:10.1101/gr.081398.108
...and microsatellite maps . BMC Genet. 6 : S34 , doi: 10.1186/1471-2156-6-S1-S34 . ↵ Huang, J. , Wei, W. , Zhang, J. , Liu, G. , Bignell, G.R. , Stratton, M.R. , Futreal, P.A. , Wooster, R. , Jones, K.W. , Shapero, M.H. ( 2004 ) Whole DNA copy number changes identified by high density oligonucleotide arrays . Hum...
Select this article
Methods: Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion
- Jon Reinders,
- Céline Delucinge Vivier,
- Grégory Theiler,
- Didier Chollet,
- Patrick Descombes,
- and Jerzy Paszkowski
Genome Res. March 2008 18: 469-476; Published in Advance January 24, 2008, doi:10.1101/gr.7073008
...( Mockler et al. 2005 ). Moreover, large fragments also increase the likelihood of co-precipitating adjacent, unmethylated DNA, causing false-positive signals, especially on high-density oligonucleotide arrays. Finally, these approaches require relatively large amounts of input DNA (2–20 μg); thus...
Select this article
Methods: High-Resolution Analysis of DNA Copy Number Using Oligonucleotide Microarrays
- Graham R. Bignell,
- Jing Huang,
- Joel Greshock,
- Stephen Watt,
- Adam Butler,
- Sofie West,
- Mira Grigorova,
- Keith W. Jones,
- Wen Wei,
- Michael R. Stratton,
- P. Andrew Futreal,
- Barbara Weber,
- Michael H. Shapero,
- and Richard Wooster
Genome Res. February 2004 14: 287-295; doi:10.1101/gr.2012304
..., Addenbrooke's Hospital, Cambridge CB2 2XZ, UK Abstract Genomic copy number alterations are a feature of many human diseases including cancer. We have evaluated the effectiveness of an oligonucleotide array, originally designed to detect single-nucleotide polymorphisms, to assess DNA copy number. We...
Select this article
Method: Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
- Gavin Ha,
- Andrew Roth,
- Daniel Lai,
- Ali Bashashati,
- Jiarui Ding,
- Rodrigo Goya,
- Ryan Giuliany,
- Jamie Rosner,
- Arusha Oloumi,
- Karey Shumansky,
- Suet-Feung Chin,
- Gulisa Turashvili,
- Martin Hirst,
- Carlos Caldas,
- Marco A. Marra,
- Samuel Aparicio,
- and Sohrab P. Shah
Genome Res. October 2012 22: 1995-2007; Published in Advance May 25, 2012, doi:10.1101/gr.137570.112
..., the input data representing the observed allelic counts in the tumor DNA are discrete in nature and thus are not well suited to commonly used Gaussian or Student’s-t distributions that are often used for the analogous problem in continuous array data. Third, the allelic count data from the tumor DNAwill...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Komura et al. 16 (12): 1575.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: