Searching journal content for articles similar to Ko et al. 12 (4): 595.

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  1. Method: Digital gene expression for non-model organisms
    • Lewis Z. Hong,
    • Jun Li,
    • Anne Schmidt-Küntzel,
    • Wesley C. Warren,
    • and Gregory S. Barsh
    Genome Res. November 2011 21: 1905-1915; Published in Advance August 15, 2011, doi:10.1101/gr.122135.111
    ...-positive errors (reads that align uniquely to a partial sequence but arise from elsewhere). Furthermore, these approaches are especially challenging for natural populationswithhigh levels of polymorphism.At the same time, sequencing-based approaches to assess gene expression are particularly appealing for non...
  2. LETTER: Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
    • Shengfeng Huang,
    • Shaochun Yuan,
    • Lei Guo,
    • Yanhong Yu,
    • Jun Li,
    • Tao Wu,
    • Tong Liu,
    • Manyi Yang,
    • Kui Wu,
    • Huiling Liu,
    • Jin Ge,
    • Yingcai Yu,
    • Huiqing Huang,
    • Meiling Dong,
    • Cuiling Yu,
    • Shangwu Chen,
    • and Anlong Xu
    Genome Res. July 2008 18: 1112-1126; Published in Advance June 18, 2008, doi:10.1101/gr.069674.107
    ...%–10% allelic polymorphism ( http://.jgi-psf.org/Brafl1/Brafl1.info.html ), the actual gene number is one-half to two-thirds of the gene model number. This number would be further reduced if those pseudogenes and genes of split predictions, overlapping predictions, and false predictions were excluded. Therefore...
  3. Resource: Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci
    • Jonathan M. Mudge,
    • Irwin Jungreis,
    • Toby Hunt,
    • Jose Manuel Gonzalez,
    • James C. Wright,
    • Mike Kay,
    • Claire Davidson,
    • Stephen Fitzgerald,
    • Ruth Seal,
    • Susan Tweedie,
    • Liang He,
    • Robert M. Waterhouse,
    • Yue Li,
    • Elspeth Bruford,
    • Jyoti S. Choudhary,
    • Adam Frankish,
    • and Manolis Kellis
    Genome Res. December 2019 29: 2073-2087; Published in Advance September 19, 2019, doi:10.1101/gr.246462.118
    ...Discovery of high-confidence human protein-coding genes and exons by whole- PhyloCSF helps elucidate 118 GWAS loci Jonathan M. Mudge1,9, Irwin Jungreis2,3,9, Toby Hunt1, Jose Manuel Gonzalez1, James C. Wright4, Mike Kay1, Claire Davidson1, Stephen Fitzgerald5, Ruth Seal1,6, Susan Tweedie1, Liang He...
    OPEN ACCESS ARTICLE
  4. LETTER: The amphioxus genome illuminates vertebrate origins and cephalochordate biology
    • Linda Z. Holland,
    • Ricard Albalat,
    • Kaoru Azumi,
    • Èlia Benito-Gutiérrez,
    • Matthew J. Blow,
    • Marianne Bronner-Fraser,
    • Frederic Brunet,
    • Thomas Butts,
    • Simona Candiani,
    • Larry J. Dishaw,
    • David E.K. Ferrier,
    • Jordi Garcia-Fernàndez,
    • Jeremy J. Gibson-Brown,
    • Carmela Gissi,
    • Adam Godzik,
    • Finn Hallböök,
    • Dan Hirose,
    • Kazuyoshi Hosomichi,
    • Tetsuro Ikuta,
    • Hidetoshi Inoko,
    • Masanori Kasahara,
    • Jun Kasamatsu,
    • Takeshi Kawashima,
    • Ayuko Kimura,
    • Masaaki Kobayashi,
    • Zbynek Kozmik,
    • Kaoru Kubokawa,
    • Vincent Laudet,
    • Gary W. Litman,
    • Alice C. McHardy,
    • Daniel Meulemans,
    • Masaru Nonaka,
    • Robert P. Olinski,
    • Zeev Pancer,
    • Len A. Pennacchio,
    • Mario Pestarino,
    • Jonathan P. Rast,
    • Isidore Rigoutsos,
    • Marc Robinson-Rechavi,
    • Graeme Roch,
    • Hidetoshi Saiga,
    • Yasunori Sasakura,
    • Masanobu Satake,
    • Yutaka Satou,
    • Michael Schubert,
    • Nancy Sherwood,
    • Takashi Shiina,
    • Naohito Takatori,
    • Javier Tello,
    • Pavel Vopalensky,
    • Shuichi Wada,
    • Anlong Xu,
    • Yuzhen Ye,
    • Keita Yoshida,
    • Fumiko Yoshizaki,
    • Jr-Kai Yu,
    • Qing Zhang,
    • Christian M. Zmasek,
    • Pieter J. de Jong,
    • Kazutoyo Osoegawa,
    • Nicholas H. Putnam,
    • Daniel S. Rokhsar,
    • Noriyuki Satoh,
    • and Peter W.H. Holland
    Genome Res. July 2008 18: 1100-1111; Published in Advance June 18, 2008, doi:10.1101/gr.073676.107
    ...amphioxus, possess a Hox15 gene, and whether the ancestral condition for deuterostomes was a Hox cluster with 15 genes adjacent to an Evx family gene. There are many other homeobox genes beside Hox genes, and most have roles in development and cell differentiation ( Bürglin 2005 ). Determining...
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