Searching journal content for articles similar to Kluger et al. 13 (4): 703.

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  1. Resource: DEAD box RNA helicases are pervasive protein kinase interactors and activators
    • Alexander Hirth,
    • Edoardo Fatti,
    • Eugen Netz,
    • Sergio P. Acebron,
    • Dimitris Papageorgiou,
    • Andrea Švorinić,
    • Cristina-Maria Cruciat,
    • Emil Karaulanov,
    • Alexandr Gopanenko,
    • Tianheng Zhu,
    • Irmgard Sinning,
    • Jeroen Krijgsveld,
    • Oliver Kohlbacher,
    • and Christof Niehrs
    Genome Res. June 2024 34: 952-966; Published in Advance July 10, 2024, doi:10.1101/gr.278264.123
    .../DHX interactome. Biclustering of the DDX/DHX interactome. Heatmap of the interactome (rows) against all DDX/DHX baits (columns). LFQ intensities from the IP-MS experiments were standardized row-wise to Z-scores. Rows and columns were clustered with spectral biclustering into seven row clusters and five column...
  2. Method: Putting genetic interactions in context through a global modular decomposition
    • Jeremy Bellay,
    • Gowtham Atluri,
    • Tina L. Sing,
    • Kiana Toufighi,
    • Michael Costanzo,
    • Philippe Souza Moraes Ribeiro,
    • Gaurav Pandey,
    • Joshua Baller,
    • Benjamin VanderSluis,
    • Magali Michaut,
    • Sangjo Han,
    • Philip Kim,
    • Grant W. Brown,
    • Brenda J. Andrews,
    • Charles Boone,
    • Vipin Kumar,
    • and Chad L. Myers
    Genome Res. August 2011 21: 1375-1387; Published in Advance June 29, 2011, doi:10.1101/gr.117176.110
    ...should give rise to biclusters—two sets of genes, either overlapping or disjoint, inwhich every gene fromone set interacts with all genes of the other. These block structures have been observed in existing genetic interactionnetworks, and in fact, a simple hierarchical clustering analysis of interaction...
  3. PERSPECTIVE: Changing perspectives in yeast research nearly a decade after the genome sequence
    • Kara Dolinski and
    • David Botstein
    Genome Res. December 2005 15: 1611-1619; doi:10.1101/gr.3727505
    ....M., Janse, D.M., Church, G.M., and Roth, F.P. 2003 . Predicting phenotype from patterns of annotation. Bioinformatics 19 (Suppl 1): i183 -i189. ↵ Kluger, Y., Basri, R., Chang, J.T., and Gerstein, M. 2003 . Spectral biclustering of microarray data: Coclustering genes and conditions. Genome Res. 13 : 703 -716...
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