Searching journal content for articles similar to Kiyosawa et al. 13 (6b): 1324.

Displaying results 1-10 of 15
For checked items
  1. Research: A transcriptome-wide systematic search does not detect A-to-I RNA editing in cis-antisense RNA duplexes
    • Zohar Rosenwasser,
    • Roni Cohen-Fultheim,
    • Ofir Shliefer,
    • Erez Y. Levanon,
    • and Eli Eisenberg
    Genome Res. March 12, 2026 ; Published in Advance March 12, 2026, doi:10.1101/gr.280820.125
    ...transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res 13: 1324– 1334. doi:10.1101/gr.982903 LavorgnaG, Dahary D, Lehner B, Sorek R, Sanderson CM, Casari G. 2004. In search of antisense. Trends Biochem Sci 29: 88–94. doi:10.1016/j.tibs .2003.12.002 Levanon EY, Eisenberg E...
    OPEN ACCESS ARTICLE
  2. LETTER: Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity
    • Miao Sun,
    • Laurence D. Hurst,
    • Gordon G. Carmichael,
    • and Jianjun Chen
    Genome Res. July 2006 16: 922-933; Published in Advance June 12, 2006, doi:10.1101/gr.5210006
    ..., the distributions of different types of qualified transcript sequences, and the compaction among the six individual s View larger version: In this window In a new window Figure 1. Proportion of sense–antisense (SA) genes or sequences in the whole gene or sequence data set in each . One sequence represents one...
  3. ARTICLE: Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized
    • Hidenori Kiyosawa,
    • Nathan Mise,
    • Shigeru Iwase,
    • Yoshihide Hayashizaki,
    • and Kuniya Abe
    Genome Res. April 2005 15: 463-474; Published in Advance March 21, 2005, doi:10.1101/gr.3155905
    ..., K. 2002 . Speculations on the role of natural antisense transcripts in mammalian X chromosome evolution. Cytogenet. Genome Res. 99 : 151 -156. ↵ Kiyosawa, H., Yamanaka, I., Osato, N., Kondo, S., and Hayashizaki, Y. 2003 . Antisense transcripts with FANTOM2 clone set and their implications for gene...
  4. PERSPECTIVE: Origin of phenotypes: Genes and transcripts
    • Thomas R. Gingeras
    Genome Res. June 2007 17: 682-690; doi:10.1101/gr.6525007
    ...are regulated have led to many landmark discoveries. These include gene cloning, transcription factor-gene interactions, and RNA-splicing, RNA-editing, RNA-transport, and RNA-translation, to mention just a few ( Fig. 1C ). For the most part, these advances have taken place in the context of studying individual...
    OPEN ACCESS ARTICLE
  5. LETTER: Naturally occurring antisense: Transcriptional leakage or real overlap?
    • Dvir Dahary,
    • Orna Elroy-Stein,
    • and Rotem Sorek
    Genome Res. March 2005 15: 364-368; Published in Advance February 14, 2005, doi:10.1101/gr.3308405
    ..., deletion, and rearrangement in the mouse and human s. Proc. Natl. Acad. Sci. 100 : 11484 -11489. ↵ Kiyosawa, H., Yamanaka, I., Osato, N., Kondo, S., and Hayashizaki, Y. 2003 . Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. 13 : 1324 -1334. ↵ Knee, R...
  6. LETTER: Discovery of Imprinted Transcripts in the Mouse Transcriptome Using Large-Scale Expression Profiling
    • Itoshi Nikaido,
    • Chika Saito,
    • Yosuke Mizuno,
    • Makiko Meguro,
    • Hidemasa Bono,
    • Moritoshi Kadomura,
    • Tomohiro Kono,
    • Gerard A. Morris,
    • Paul A. Lyons,
    • Mitsuo Oshimura,
    • RIKEN GER Group,
    • GSL Members,
    • Yoshihide Hayashizaki,
    • and Yasushi Okazaki
    Genome Res. June 2003 13: 1402-1409; doi:10.1101/gr.1055303
    .... Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. (this issue). ↵ Kumar, M. and Carmichael, G.G. 1998 . Antisense RNA: Function and fate of duplex RNA in cells of higher eukaryotes. Microbiol. Mol. Biol. Rev. 62 : 1415 -1434. ↵ MacDonald, H.R. and Wevrick...
  7. LETTER: Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22
    • Leonard Lipovich and
    • Mary-Claire King
    Genome Res. January 2006 16: 45-54; Published in Advance December 12, 2005, doi:10.1101/gr.3883606
    ...( Hubbard et al. 2002 ; Kent et al. 2002 ), the functional definition of a mammalian gene remains in flux ( Okazaki and Hume 2003 ), in part because more of the is transcribed than is accounted for by reference protein-coding gene sets. Sequencing random clones from normalized and subtracted high-quality c...
  8. RESOURCE: Inferring Higher Functional Information for RIKEN Mouse Full-Length cDNA Clones With FACTS
    • Takeshi Nagashima,
    • Diego G. Silva,
    • Nikolai Petrovsky,
    • Luis A. Socha,
    • Harukazu Suzuki,
    • Rintaro Saito,
    • Takeya Kasukawa,
    • Igor V. Kurochkin,
    • Akihiko Konagaya,
    • and Christian Schönbach
    Genome Res. June 2003 13: 1520-1533; doi:10.1101/gr.1019903
    ...to prevent massive error propagation when computationally inferred functional information is incorporated into curated databases. In light of these issues, we sought to construct a system that is (1) transcript focused (FANTOM2 clone set), (2) supports large-scale data retrieval, (3) interrelates basic gene...
  9. ARTICLE: Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
    • Timothy Ravasi,
    • Harukazu Suzuki,
    • Ken C. Pang,
    • Shintaro Katayama,
    • Masaaki Furuno,
    • Rie Okunishi,
    • Shiro Fukuda,
    • Kelin Ru,
    • Martin C. Frith,
    • M. Milena Gongora,
    • Sean M. Grimmond,
    • David A. Hume,
    • Yoshihide Hayashizaki,
    • and John S. Mattick
    Genome Res. January 2006 16: 11-19; Published in Advance December 12, 2005, doi:10.1101/gr.4200206
    ...understanding of mammalian biology, we have undertaken a series of structured studies on the putative ncRNAs identified by FANTOM2. Results Bioinformatics analysis of the non-coding transcript set For the purposes of this analysis, we divided the clones in the FANTOM2 representative transcript set (RTS), which...
  10. Research: Widespread formation of double-stranded RNAs in testis
    • Andreas Werner,
    • James E. Clark,
    • Calum Samaranayake,
    • John Casement,
    • Hany S. Zinad,
    • Shaymaa Sadeq,
    • Surar Al-Hashimi,
    • Martin Smith,
    • Noora Kotaja,
    • and John S. Mattick
    Genome Res. July 2021 31: 1174-1186; Published in Advance June 22, 2021, doi:10.1101/gr.265603.120
    ...that intersect with antisense transcripts compared to the control total dsRNA gene set. Significance was determined by one-sample t-test.dsRNA formation is essential for male germ cell developmentFinally, we generated a parsed list of dsRNA genes by intersecting the two dsRNA lists from testis (1893) (Fig. 1B...
For checked items

Search Results

Next 5 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. April 2026, 36 (4)
  1. Current Issue
  1. Alert me to new issues of Genome Research