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Research: Enhancer methylation dynamics contribute to cancer plasticity and patient mortality
- Rachel E. Bell,
- Tamar Golan,
- Danna Sheinboim,
- Hagar Malcov,
- David Amar,
- Avi Salamon,
- Tamar Liron,
- Sahar Gelfman,
- Yankel Gabet,
- Ron Shamir,
- and Carmit Levy
Genome Res. May 2016 26: 601-611; Published in Advance February 23, 2016, doi:10.1101/gr.197194.115
...G sites belonging to CpG islands, shores, shelves, enhancers, and UTRs. Given that this record does not have information of CpG sites in promoters, exons, or introns, we used the UCSC table “knownGene” to identify these sites. Third, some CpG sites had several annotations; thus, we divided the Cp...
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PERSPECTIVE: Structure and function of the human genome
- Peter F.R. Little
Genome Res. December 2005 15: 1759-1766; doi:10.1101/gr.4560905
.... The UCSC Genome Browser database. Nucleic Acids Res. 31 : 51 -54. ↵ Kent, W.J., Hsu, F., Karolchik, D., Kuhn, R.M., Clawson, H., Trumbower, H., and Haussler, D. 2005 . Exploring relationships and mining data with the UCSC Gene Sorter. Genome Res. 15 : 737 -741. ↵ Kim, T.H., Barrera, L.O., Zheng, M., Qu, C...

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