Searching journal content for articles similar to Kennedy et al. 11 (10): 1641.

Displaying results 1-10 of 10

For checked items

view abstracts
download to citation manager

Select this article
LETTER: Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1
- Nitin S. Baliga,
- Sarah J. Bjork,
- Richard Bonneau,
- Min Pan,
- Chika Iloanusi,
- Molly C.H. Kottemann,
- Leroy Hood,
- and Jocelyne DiRuggiero
Genome Res. June 2004 14: 1025-1035; Published in Advance May 12, 2004, doi:10.1101/gr.1993504
...data, many experimentally testable hypotheses that describe the metabolic and regulatory networks of Halobacterium NRC-1. Biological systems have evolved mechanisms to appropriately respond to environmental stresses that can damage proteins and DNA. Halobacterium NRC-1 , for example, has evolved...
Select this article
ARTICLE: Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea
- Nitin S. Baliga,
- Richard Bonneau,
- Marc T. Facciotti,
- Min Pan,
- Gustavo Glusman,
- Eric W. Deutsch,
- Paul Shannon,
- Yulun Chiu,
- Rueyhung Sting Weng,
- Rueichi Richie Gan,
- Pingliang Hung,
- Shailesh V. Date,
- Edward Marcotte,
- Leroy Hood,
- and Wailap Victor Ng
Genome Res. November 2004 14: 2221-2234; doi:10.1101/gr.2700304
...environmental response system Photobiology: opsins, cryptochrome/photolyase, clock regulators, and transducers Similar to Halobacterium sp . NRC-1, H. marismortui inhabits an extreme environment characterized by high salt concentration, low oxygen solubility, and high light intensity. An evolutionary adaptation...
Select this article
ARTICLE: Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii
- Neil F.W. Saunders,
- Torsten Thomas,
- Paul M.G. Curmi,
- John S. Mattick,
- Elizabeth Kuczek,
- Rob Slade,
- John Davis,
- Peter D. Franzmann,
- David Boone,
- Karl Rusterholtz,
- Robert Feldman,
- Chris Gates,
- Shellie Bench,
- Kevin Sowers,
- Kristen Kadner,
- Andrea Aerts,
- Paramvir Dehal,
- Chris Detter,
- Tijana Glavina,
- Susan Lucas,
- Paul Richardson,
- Frank Larimer,
- Loren Hauser,
- Miriam Land,
- and Ricardo Cavicchioli
Genome Res. July 2003 13: 1580-1588; Published in Advance June 12, 2003, doi:10.1101/gr.1180903
.... Biopolymers 22 : 2577 -2637. ↵ Karner, M.B., DeLong, E.F., and Karl, D.M. 2001 . Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409 : 507 -510. ↵ Kennedy, S.P., Ng, W.V., Salzberg, S.L., Hood, L., and DasSarma, S. 2001 . Understanding the adaptation of Halobacterium species NRC-1...
Select this article
ARTICLE: A Complete Sequence of the T. tengcongensis Genome
- Qiyu Bao,
- Yuqing Tian,
- Wei Li,
- Zuyuan Xu,
- Zhenyu Xuan,
- Songnian Hu,
- Wei Dong,
- Jian Yang,
- Yanjiong Chen,
- Yanfen Xue,
- Yi Xu,
- Xiaoqin Lai,
- Li Huang,
- Xiuzhu Dong,
- Yanhe Ma,
- Lunjiang Ling,
- Huarong Tan,
- Runsheng Chen,
- Jian Wang,
- Jun Yu,
- and Huanming Yang
Genome Res. May 1, 2002 12: 689-700; doi:10.1101/gr.219302
...and the optimal growth temperature is found among the sequenced thermophiles. It is concluded that thermophiles are a biologically and phylogenetically divergent group of prokaryotes that have converged to sustain extreme environmental conditions over evolutionary timescale. [Supplemental material is available...
Select this article
ARTICLE: Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes
- Toshiaki Fukui,
- Haruyuki Atomi,
- Tamotsu Kanai,
- Rie Matsumi,
- Shinsuke Fujiwara,
- and Tadayuki Imanaka
Genome Res. March 2005 15: 352-363; Published in Advance February 14, 2005, doi:10.1101/gr.3003105
...for the conventional two-step oxidation of GAP, these enzymes in Thermococcales have been proposed to act in the gluconeogenic direction. T. kodakaraensis and a limited number of other archaea ( P. furiosus, Sulfolobus spp., Aeropyrum pernix , and Halobacterium sp. NRC-1) possess orthologs for GAP dehydrogenase...
Select this article
Method: Detecting differential growth of microbial populations with Gaussian process regression
- Peter D. Tonner,
- Cynthia L. Darnell,
- Barbara E. Engelhardt,
- and Amy K. Schmid
Genome Res. February 2017 27: 320-333; Published in Advance November 18, 2016, doi:10.1101/gr.210286.116
...of stress against other stressors (Jenkins et al. 1988; Lu et al. 2009). Conversely, cells also induce stress-specific responses to aid survival for a particular condition (Stephen et al. 1995; Zuber 2009). The hypersaline-adapted, or halophilic, archaeon Halobacterium salinarum is a model organism uniquely...
OPEN ACCESS ARTICLE
Select this article
ARTICLE: A systems view of haloarchaeal strategies to withstand stress from transition metals
- Amardeep Kaur,
- Min Pan,
- Megan Meislin,
- Marc T. Facciotti,
- Raafat El-Gewely,
- and Nitin S. Baliga
Genome Res. July 2006 16: 841-854; Published in Advance June 2, 2006, doi:10.1101/gr.5189606
...candidate for such global analysis is Halobacterium NRC-1, an archaeon that thrives in a &gt;4.0 M salinity environment. This halophile is easily cultured and manipulated in the laboratory and has a range of systems-analysis tools available for its inquiry ( Weston et al. 2003 ). In this report, we describe...
Select this article
Resource: The Proteome Folding Project: Proteome-scale prediction of structure and function
- Kevin Drew,
- Patrick Winters,
- Glenn L. Butterfoss,
- Viktors Berstis,
- Keith Uplinger,
- Jonathan Armstrong,
- Michael Riffle,
- Erik Schweighofer,
- Bill Bovermann,
- David R. Goodlett,
- Trisha N. Davis,
- Dennis Shasha,
- Lars Malmström,
- and Richard Bonneau
Genome Res. November 2011 21: 1981-1994; Published in Advance August 8, 2011, doi:10.1101/gr.121475.111
...unreachable by homology modeling. Unfortunately, de novo prediction methods require vast computational resources, and because of this, published pipelines that include de novo structure prediction are incapable of keeping pace with incoming genomic data. This study focuses on this fourth type of annotation...
OPEN ACCESS ARTICLE
Select this article
ARTICLE: The anatomy of microbial cell state transitions in response to oxygen
- Amy K. Schmid,
- David J. Reiss,
- Amardeep Kaur,
- Min Pan,
- Nichole King,
- Phu T. Van,
- Laura Hohmann,
- Daniel B. Martin,
- and Nitin S. Baliga
Genome Res. October 2007 17: 1399-1413; Published in Advance September 4, 2007, doi:10.1101/gr.6728007
...across these distinct but interconnected processes remain to be characterized to build a physiological model of systems behavior. We chose the haloarchaeon Halobacterium salinarum NRC-1 as a model organism to investigate the systems-level oxygen response. This organism, found in the Great Salt Lake...
Select this article
LETTER: Widespread Selection for Local RNA Secondary Structure in Coding Regions of Bacterial Genes
- Luba Katz and
- Christopher B. Burge
Genome Res. September 2003 13: 2042-2051; doi:10.1101/gr.1257503
...to be a general feature of most Eubacteria. These results are not inconsistent with the findings of Workman and Krogh ( 1999 ), as only 2 of 46 sequences in their analyses came from Eubacteria. Two of eight Archaea studied, the thermophiles M. thermoautotropicum and Halobacterium sp. NRC-1, exhibited...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Kennedy et al. 11 (10): 1641.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: