Searching journal content for articles similar to Kelly et al. 32 (8): 1474.

Displaying results 1-4 of 4
For checked items
  1. Research: Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks
    • Marta Farré,
    • Jaebum Kim,
    • Anastasia A. Proskuryakova,
    • Yang Zhang,
    • Anastasia I. Kulemzina,
    • Qiye Li,
    • Yang Zhou,
    • Yingqi Xiong,
    • Jennifer L. Johnson,
    • Polina L. Perelman,
    • Warren E. Johnson,
    • Wesley C. Warren,
    • Anna V. Kukekova,
    • Guojie Zhang,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Alexander S. Graphodatsky,
    • Jian Ma,
    • Harris A. Lewin,
    • and Denis M. Larkin
    Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118
    ...in EBR areas because these intervals are enriched in lineage-specific TEs. In support of this theory, the 25 TF motifs were strongly associated with ruminant-specific TEs. Therefore, our data point to ruminant-specific TEs being used in evolution as possible regulatory elements in two ways: They may...
  2. Research: Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
    • Liangxi Wang,
    • Tiegh Taylor,
    • Kumaragurubaran Rathnakumar,
    • Nadiya Khyzha,
    • Minggao Liang,
    • Azad Alizada,
    • Laura F. Campitelli,
    • Sara E. Pour,
    • Zain M. Patel,
    • Lina Antounians,
    • Ian C. Tobias,
    • Huayun Hou,
    • Timothy R. Hughes,
    • Sushmita Roy,
    • Jennifer A. Mitchell,
    • Jason E. Fish,
    • and Michael D. Wilson
    Genome Res. July 2025 35: 1544-1559; Published in Advance June 6, 2025, doi:10.1101/gr.280357.124
    ...discovered a substantial expansion of IFNG-inducible elements by a ruminant-specific SINE, Bov-A2 (∼12,000 instances), for the regulatory evolution of ruminant innate immunity. Bov-A2 and Bov-tA1/2/3 constitute the family BovA (Nijman et al. 2002; Nilsson et al. 2012; Bao et al. 2015), and the related...
  3. Method: k-mer cross-species profiling reveals taxon-specific TE expansions accompanied by KZFP co-option and functional impacts in ruminants
    • Pengju Zhao,
    • Jiayi He,
    • Chen Peng,
    • Yuelang Zhang,
    • Chong Wang,
    • Dongyou Yu,
    • Lingzhao Fang,
    • and Zhengguang Wang
    Genome Res. March 23, 2026 gr.281289.125; Published in Advance March 23, 2026, doi:10.1101/gr.281289.125
    ...). While the 62 majority of TE insertions are either neutral or potentially harmful to host organisms, they 63 have unpublished nonetheless been instrumental in shaping host evolution through 64 their distinctive movement patterns (Irina 2018; Roy et al. 2018; Raquel et al. 2022). These 65 TEs demonstrate...
    ACCEPTED MANUSCRIPT
  4. Resource: Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle
    • Alexander S. Leonard,
    • Xena M. Mapel,
    • and Hubert Pausch
    Genome Res. February 2024 34: 300-309; Published in Advance February 14, 2024, doi:10.1101/gr.278267.123
    ..., Wieland T, Strom TM, Meitinger T, et al. 2013. Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage. BMC Genomics 14: 446. doi:10.1186/1471-2164-14-446 ↵Kelly CJ, Chitko-McKown CG, Chuong EB. 2022. Ruminant-specific retrotransposons shape...
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. April 2026, 36 (4)
  1. Current Issue
  1. Alert me to new issues of Genome Research