Searching journal content for articles similar to Kelly et al. 10 (4): 558.

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  1. LETTER: Genetic variation in the zebrafish
    • Victor Guryev,
    • Marco J. Koudijs,
    • Eugene Berezikov,
    • Stephen L. Johnson,
    • Ronald H.A. Plasterk,
    • Fredericus J.M. van Eeden,
    • and Edwin Cuppen
    Genome Res. April 2006 16: 491-497; Published in Advance March 13, 2006, doi:10.1101/gr.4791006
    ...model organism several decades ago and now serves as a primary model for developmental biology, there is only limited data on its genetic variation. An establishment of a dense polymorphism map becomes a requirement for effective linkage analysis and cloning approaches in zebrafish. By comparing ESTs...
  2. Research: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
    • Kang Du,
    • Oliver Deusch,
    • Ilja Bezrukov,
    • Christa Lanz,
    • Yann Guiguen,
    • Margarete Hoffmann,
    • Anette Habring,
    • Detlef Weigel,
    • Manfred Schartl,
    • and Christine Dreyer
    Genome Res. March 2025 35: 489-498; Published in Advance March 5, 2025, doi:10.1101/gr.279582.124
    ...are indicated under Ygua: 1, 00013F_0; 2, 000200F_0; 3, 000250F_0; 4, 000181F_0; and 5, 000149F_0.A genetic linkage map based on SNP markers deduced from EST and BAC end sequences (Tripathi et al. 2009b) had served as guide for the assembly of both the previously published female and male s. The most distal sex...
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  3. ARTICLE: A Genetic Linkage Map for Zebrafish: Comparative Analysis and Localization of Genes and Expressed Sequences
    • Michael A. Gates,
    • Lisa Kim,
    • Elizabeth S. Egan,
    • Timothy Cardozo,
    • Howard I. Sirotkin,
    • Scott T. Dougan,
    • Deval Lashkari,
    • Ruben Abagyan,
    • Alexander F. Schier,
    • and William S. Talbot
    Genome Res. April 1, 1999 9: 334-347; doi:10.1101/gr.9.4.334
    ...linkage map of the zebrafish . Shown are the positions of 389 markers genotyped on a single mapping panel consisting of 48 haploid zebrafish embryos. The map includes 157 gene and EST markers, 15 STS markers, and 217 SSLP markers. The SSLPs, which are designated as “z” and “gof” markers, are described...
  4. LETTER: The Zebrafish Annexin Gene Family
    • Steven A. Farber,
    • Robert A. De Rose,
    • Eric S. Olson,
    • and Marnie E. Halpern
    Genome Res. June 2003 13: 1082-1096; doi:10.1101/gr.479603
    ...function, we have cloned 11 zebrafish anx genes. Four genes ( anx1a, anx2a, anx5 ,and anx11a) were identified by screening a zebrafish cDNA library with a Xenopus anx2 fragment. For these genes, full-length cDNA sequences were used to cluster 212 EST sequences generated by the Zebrafish Genome...
  5. RESOURCE: A Consensus Linkage Map of the Chicken Genome
    • Martien A.M. Groenen,
    • Hans H. Cheng,
    • Nat Bumstead,
    • Bernard F. Benkel,
    • W. Elwood Briles,
    • Terry Burke,
    • Dave W. Burt,
    • Lyman B. Crittenden,
    • Jerry Dodgson,
    • Jossi Hillel,
    • Sue Lamont,
    • Abel Ponce de Leon,
    • Morris Soller,
    • Hideaki Takahashi,
    • and Alain Vignal
    Genome Res. January 1, 2000 10: 137-147; doi:10.1101/gr.10.1.137
    ...cytogenetically are underlined; those known to represent expressed sequences (identified genes and ESTs) are shown in boldface type. View larger version: In this window In a new window Figure 2. Comparative mapping results among chicken, man, and mouse. The order of the loci is according to the linkage map shown...
  6. RESOURCE: The zebrafish gene map defines ancestral vertebrate chromosomes
    • Ian G. Woods,
    • Catherine Wilson,
    • Brian Friedlander,
    • Patricia Chang,
    • Daengnoy K. Reyes,
    • Rebecca Nix,
    • Peter D. Kelly,
    • Felicia Chu,
    • John H. Postlethwait,
    • and William S. Talbot
    Genome Res. September 2005 15: 1307-1314; Published in Advance August 18, 2005, doi:10.1101/gr.4134305
    ...common ancestor of bony vertebrates. Methods Linkage analysis Primer design, PCR assays, and linkage analysis were performed as previously described ( Kelly et al. 2000 ). In some cases, PCR primers were designed by using alignments of ESTs or genes with genomic DNA derived from the zebrafish whole...
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  7. LETTER: A Comparative Map of the Zebrafish Genome
    • Ian G. Woods,
    • Peter D. Kelly,
    • Felicia Chu,
    • Phuong Ngo-Hazelett,
    • Yi-Lin Yan,
    • Hui Huang,
    • John H. Postlethwait,
    • and William S. Talbot
    Genome Res. December 1, 2000 10: 1903-1914; doi:10.1101/gr.164600
    ...genes and expressed sequence tags (ESTs) on zebrafish linkage group LG 17 and the positions of their human counterparts on chromosome (Hsa) 14. ( B ) Maps showing 11 genes and ESTs on zebrafish LG 8 and the positions of their human counterparts on the short arm of Hsa 1. In both panels, the entire...
  8. Methods: Efficient Target-Selected Mutagenesis in Zebrafish
    • Erno Wienholds,
    • Freek van Eeden,
    • Marit Kosters,
    • Josine Mudde,
    • Ronald H.A. Plasterk,
    • and Edwin Cuppen
    Genome Res. December 2003 13: 2700-2707; Published in Advance January 1, 2003, doi:10.1101/gr.1725103
    ...Table 1. Summary of Amplicons Screened and Mutations Found Amplicon Selection and Primer Design As no fully assembled zebrafish is available yet, PCR amplicons for genes of interest were designed from cDNA or EST sequences. These sequences were used as input for GENOTRACE ( Berezikov et al. 2002 ; http...
  9. RESOURCE: The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences
    • Neil Hukriede,
    • Dan Fisher,
    • Jonathan Epstein,
    • Lucille Joly,
    • Patricia Tellis,
    • Yi Zhou,
    • Brad Barbazuk,
    • Kristine Cox,
    • Laura Fenton-Noriega,
    • Candace Hersey,
    • Jennifer Miles,
    • Xiaoming Sheng,
    • Anhua Song,
    • Rick Waterman,
    • Stephen L. Johnson,
    • Igor B. Dawid,
    • Mario Chevrette,
    • Leonard I. Zon,
    • John McPherson,
    • and Marc Ekker
    Genome Res. December 1, 2001 11: 2127-2132; Published in Advance November 12, 2001, doi:10.1101/gr.210601
    ...,372 cR, with 118 kb/cR. The distribution of ESTs according to linkage groups shows relatively little variation (minimum, 73; maximum, 201). This observation, combined with a relatively uniform size for zebrafish chromosomes, as previously indicated by karyotyping, indicates that there are no especially...
  10. ARTICLE: A Gene Expression Screen in Zebrafish Embryogenesis
    • Tetsuhiro Kudoh,
    • Michael Tsang,
    • Neil A. Hukriede,
    • Xiongfong Chen,
    • Michael Dedekian,
    • Christopher J. Clarke,
    • Anne Kiang,
    • Stephanie Schultz,
    • Jonathan A. Epstein,
    • Reiko Toyama,
    • and Igor B. Dawid
    Genome Res. December 1, 2001 11: 1979-1987; Published in Advance November 12, 2001, doi:10.1101/gr.209601
    ...A Gene Expression Screen in Zebrafish Embryogenesis Tetsuhiro Kudoh 1 , Michael Tsang 1 , Neil A. Hukriede , Xiongfong Chen 2 , Michael Dedekian , Christopher J. Clarke , Anne Kiang , Stephanie Schultz , Jonathan...
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