Searching journal content for articles similar to Kawata et al. 30 (10): 1481.

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  1. Resource: Isoform- and pathway-specific regulation of post-transcriptional RNA processing in human cells
    • Ishwarya Venkata Narayanan,
    • Karan Bedi,
    • Brian Magnuson,
    • Ariel McShane,
    • Mario Ashaka,
    • Michelle Paulsen,
    • Thomas E Wilson,
    • and Mats Ljungman
    Genome Res. March 26, 2026 gr.280892.125; Published in Advance March 26, 2026, doi:10.1101/gr.280892.125
    ...-specific turnover (Maier et al. 2020), while Dyrec-seq 73 utilizes double metabolic labeling with bromouridine and 4-thiouridine (4sU) to measure 74 both synthesis and degradation rates (Kawata et al. 2020). Finally, INSPEcT is a 75 computational method that estimates RNA turnover rates from steady-state RNA-seq 76...
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  2. Method: Degradation dynamics of microRNAs revealed by a novel pulse-chase approach
    • Matteo J. Marzi,
    • Francesco Ghini,
    • Benedetta Cerruti,
    • Stefano de Pretis,
    • Paola Bonetti,
    • Chiara Giacomelli,
    • Marcin M. Gorski,
    • Theresia Kress,
    • Mattia Pelizzola,
    • Heiko Muller,
    • Bruno Amati,
    • and Francesco Nicassio
    Genome Res. April 2016 26: 554-565; Published in Advance January 28, 2016, doi:10.1101/gr.198788.115
    ...to the definition of cell identity and behavior in normal physiology and disease. To date, the dynamics of miRNA degradation and the mechanisms involved in remain largely obscure, in particular, in higher organisms. Here, we developed a pulse-chase approach based on metabolic RNA labeling to calculate miRNA decay...
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  3. Method: Capturing in vivo RNA transcriptional dynamics from the malaria parasite Plasmodium falciparum
    • Heather J. Painter,
    • Manuela Carrasquilla,
    • and Manuel Llinás
    Genome Res. June 2017 27: 1074-1086; Published in Advance April 17, 2017, doi:10.1101/gr.217356.116
    ...supplementation of pyrimidine salvage enzymes in Plasmodiumwould restore thismetabolic pathway, thereby enabling methods that utilize biosynthetically labeled RNA (Friedel and Dolken 2009). To probe transcriptional dynamics in P. falciparum, we have developed a customizable approach to capture active...
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