Searching journal content for articles similar to Kang et al. 21 (6): 925.

Displaying results 1-10 of 23

For checked items

view abstracts
download to citation manager

Select this article
Research: Dynamic A-to-I RNA editing in response to gut microbiome in honey bees
- Yuange Duan,
- Min Huang,
- Lin Ye,
- Ling Ma,
- Yashuai Wu,
- Yating Du,
- Jiyao Liu,
- Fan Song,
- Li Tian,
- Wanzhi Cai,
- Hu Li,
- Xin Zhou,
- and Shiqi Luo
Genome Res. March 4, 2026 gr.280291.124; Published in Advance March 4, 2026, doi:10.1101/gr.280291.124
...single bacterium Lactobacillus or Bombilactobacillus instead of Gilliamella in GF bees 33 successfully restores the Adar p.482 Ile>Met and the global editing level. Our work 34 demonstrates the complex and dynamic transcriptomic diversity exerted by A-to-I RNA 35 editing, and discovers the axis of gut...
- Abstract
- Full Text (PDF)
ACCEPTED MANUSCRIPT
Select this article
Method: Strand-specific deep sequencing of the transcriptome
- Ana P. Vivancos,
- Marc Güell,
- Juliane C. Dohm,
- Luis Serrano,
- and Heinz Himmelbauer
Genome Res. July 2010 20: 989-999; Published in Advance June 2, 2010, doi:10.1101/gr.094318.109
...of transcription start sites and untranslated regions. DSSS data for mouse confirmed strand specificity of the protocol and the general applicability of the approach to studying eukaryotic transcription. We propose DSSS as a simple and efficient strategy for strand-specific transcriptome sequencing and as a tool...
Select this article
Research: The chromatin landscape of the histone-possessing Bacteriovorax bacteria
- Georgi K. Marinov,
- Benjamin Doughty,
- Anshul Kundaje,
- and William J. Greenleaf
Genome Res. January 2025 35: 109-123; Published in Advance November 21, 2024, doi:10.1101/gr.279418.124
...proposed to exhibit a range of divergent features compared with histones in archaea and eukaryotes. However, no functional genomic studies of the properties of Bdellovibrionota chromatin have been carried out. In this work, we map the landscape of chromatin accessibility, active transcription, and three...
Select this article
Resource: CGC1, a new reference genome for Caenorhabditis elegans
- Kazuki Ichikawa,
- Massa J. Shoura,
- Karen L. Artiles,
- Dae-Eun Jeong,
- Chie Owa,
- Haruka Kobayashi,
- Yoshihiko Suzuki,
- Manami Kanamori,
- Yu Toyoshima,
- Yuichi Iino,
- Ann E. Rougvie,
- Lamia Wahba,
- Andrew Z. Fire,
- Erich M. Schwarz,
- and Shinichi Morishita
Genome Res. August 2025 35: 1902-1918; Published in Advance July 15, 2025, doi:10.1101/gr.280274.124
.... S13). One possible explanation for this pattern is that the CHROMOSOME_X array arose by more recent transposition and amplification of a simpler pSX1 segment from the CHROMOSOME_V array, which would give elements in the CHROMOSOME_X array less time to diverge from one another.View larger version...
OPEN ACCESS ARTICLE
Select this article
Research: Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
- Cyril Matthey-Doret,
- Morgan J. Colp,
- Pedro Escoll,
- Agnès Thierry,
- Pierrick Moreau,
- Bruce Curtis,
- Tobias Sahr,
- Matt Sarrasin,
- Michael W. Gray,
- B. Franz Lang,
- John M. Archibald,
- Carmen Buchrieser,
- and Romain Koszul
Genome Res. September 2022 32: 1698-1710; Published in Advance September 15, 2022, doi:10.1101/gr.276375.121
...could resist digestion of free-living amoebae (Drozanski 1956), it was not until the discovery that Legionella pneumophila replicated in amoebae that researchers began studying the bacterium–amoeba relationship in depth (Rowbotham 1980). L. pneumophila is the agent responsible for Legionnaires’ disease...
Select this article
Research: Listeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection
- Martin A. Fischer,
- Tim Engelgeh,
- Patricia Rothe,
- Stephan Fuchs,
- Andrea Thürmer,
- and Sven Halbedel
Genome Res. September 2022 32: 1711-1726; Published in Advance September 16, 2022, doi:10.1101/gr.276747.122
...Genome Sequencing, Robert Koch Institute, 13353 Berlin, Germany ↵4 Present address: FG13 Nosocomial Pathogens and Antibiotic Resistances, Robert Koch Institute, 38855 Wernigerode, Germany Corresponding author: halbedels@rki.deAbstractThe Gram-positive bacterium Listeria monocytogenes occurs widespread...
Select this article
Research: AP-1 subunits converge promiscuously at enhancers to potentiate transcription
- Jungkyun Seo,
- D. Dewran Koçak,
- Luke C. Bartelt,
- Courtney A. Williams,
- Alejandro Barrera,
- Charles A. Gersbach,
- and Timothy E. Reddy
Genome Res. April 2021 31: 538-550; Published in Advance March 5, 2021, doi:10.1101/gr.267898.120
...27708, USA; 8Department of Molecular Genetics and Microbiology, Duke University, Durham, North Carolina 27708, USA ↵9 These authors contributed equally to this work. Corresponding authors: tim.reddy@duke.edu, Charles.gersbach@duke.eduAbstractThe AP-1 transcription factor (TF) dimer contributes to many...
OPEN ACCESS ARTICLE
Select this article
Research: Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation
- Bo Li,
- Karl A.G. Kremling,
- Penghao Wu,
- Robert Bukowski,
- Maria C. Romay,
- En Xie,
- Edward S. Buckler,
- and Mingsheng Chen
Genome Res. October 2018 28: 1555-1565; Published in Advance August 30, 2018, doi:10.1101/gr.229716.117
...the reverse transcription and finally being sequenced. Combined with sequence analysis, we found that poly(A) motifs (more than three continuous A nucleotides) occurred more frequently in the sequence upstream of the five regions (Fig. 3). Although the amplification rate of Region 2 should be much lower than...
Select this article
Research: RNA–DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA
- Dan Bar-Yaacov,
- Gal Avital,
- Liron Levin,
- Allison L. Richards,
- Naomi Hachen,
- Boris Rebolledo Jaramillo,
- Anton Nekrutenko,
- Raz Zarivach,
- and Dan Mishmar
Genome Res. November 2013 23: 1789-1796; Published in Advance August 2, 2013, doi:10.1101/gr.161265.113
...transcripts are generally identical to the underlying DNA sequences. Nevertheless, RNA–DNA differences (RDDs) were found in the nuclear human and in plants and animals but not in human mitochondria. Here, by deep sequencing of human mitochondrial DNA (mtDNA) and RNA, we identified three RDD sites at mt...
Select this article
Research: Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis
- Huan Wang,
- Pil Joong Chung,
- Jun Liu,
- In-Cheol Jang,
- Michelle J. Kean,
- Jun Xu,
- and Nam-Hai Chua
Genome Res. March 2014 24: 444-453; Published in Advance January 8, 2014, doi:10.1101/gr.165555.113
...; Wong et al. 1987; Shah and Clancy 1992). Various techniques and -wide analyses of transcriptome data have been used to identify NATs (Faghihi andWahlestedt 2009). These studies uncovered considerable antisense transcription for Saccharomyces cerevisiae (27% of genomic loci) (Faghihi and Wahlestedt 2009...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Kang et al. 21 (6): 925.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: