Searching journal content for articles similar to Jungreis et al. 21 (12): 2096.

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  1. Research: Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization
    • Marco Mariotti,
    • Didac Santesmasses,
    • Salvador Capella-Gutierrez,
    • Andrea Mateo,
    • Carme Arnan,
    • Rory Johnson,
    • Salvatore D'Aniello,
    • Sun Hee Yim,
    • Vadim N. Gladyshev,
    • Florenci Serras,
    • Montserrat Corominas,
    • Toni Gabaldón,
    • and Roderic Guigó
    Genome Res. September 2015 25: 1256-1267; Published in Advance July 20, 2015, doi:10.1101/gr.190538.115
    ...and Guigó 2008). In this respect, there is growing evidence for abundant stop codon readthrough in insects, with UGA being the most frequently observed readthrough codon in Drosophila (Jungreis et al. 2011). Here, we have found additional strong evidence in support of the translational recoding of SPS1-UGA...
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  2. Research: Evolution at two levels of gene expression in yeast
    • Carlo G. Artieri and
    • Hunter B. Fraser
    Genome Res. March 2014 24: 411-421; Published in Advance December 6, 2013, doi:10.1101/gr.165522.113
    ...acting at both levels of regulation. Finally, we also uncover multiple instances of stop-codon readthrough that are conserved between species. Our analysis reveals the underappreciated complexity of post-transcriptional regulatory divergence and indicates that partitioning the search for the locus...
  3. Resource: Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci
    • Jonathan M. Mudge,
    • Irwin Jungreis,
    • Toby Hunt,
    • Jose Manuel Gonzalez,
    • James C. Wright,
    • Mike Kay,
    • Claire Davidson,
    • Stephen Fitzgerald,
    • Ruth Seal,
    • Susan Tweedie,
    • Liang He,
    • Robert M. Waterhouse,
    • Yue Li,
    • Elspeth Bruford,
    • Jyoti S. Choudhary,
    • Adam Frankish,
    • and Manolis Kellis
    Genome Res. December 2019 29: 2073-2087; Published in Advance September 19, 2019, doi:10.1101/gr.246462.118
    ...the full sequence, which is necessary when considering individual exons.We previously showed the ability of PhyloCSF and its predecessor, CSF, to add CDS annotation to s within the Schizosaccharomyces (Lin et al. 2011) and Drosophila lineages (Lin et al. 2007; The modENCODE Consortium et al. 2010; Jungreis...
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  4. Research: Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts
    • Milana Frenkel-Morgenstern,
    • Vincent Lacroix,
    • Iakes Ezkurdia,
    • Yishai Levin,
    • Alexandra Gabashvili,
    • Jaime Prilusky,
    • Angela del Pozo,
    • Michael Tress,
    • Rory Johnson,
    • Roderic Guigo,
    • and Alfonso Valencia
    Genome Res. July 2012 22: 1231-1242; Published in Advance May 15, 2012, doi:10.1101/gr.130062.111
    ...transcripts are genuinely expressed in human cells. Using high throughput RNA sequencing, mass spectrometry experimental data, and functional annotation, we studied 7424 putative human chimeric RNAs. We confirmed the expression of 175 chimeric RNAs in 16 human tissues, with an abundance varying from 0...
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