Searching journal content for articles similar to Jungfleisch et al. 27 (4): 663.

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  1. Research: Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
    • Kazuaki Yamaguchi,
    • Yoshinobu Uno,
    • Mitsutaka Kadota,
    • Osamu Nishimura,
    • Ryo Nozu,
    • Kiyomi Murakumo,
    • Rui Matsumoto,
    • Keiichi Sato,
    • and Shigehiro Kuraku
    Genome Res. September 2023 33: 1527-1540; Published in Advance August 17, 2023, doi:10.1101/gr.276840.122
    ...the Linked-Read data of 46.4 times the size was performed with the program Supernova v2.0 (Weisenfeld et al. 2017). The resultant sequences were subjected to scaffolding with the program P_RNA_scaffolder (commit 7941e0f in GitHub) (Zhu et al. 2018) using the result of the alignment of transcriptome sequence...
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  2. Research: Motif conservation, stability, and host gene expression are the main drivers of snoRNA expression across vertebrates
    • Étienne Fafard-Couture,
    • Pierre-Étienne Jacques,
    • and Michelle S. Scott
    Genome Res. April 2023 33: 525-540; Published in Advance April 18, 2023, doi:10.1101/gr.277483.122
    ...et al. 2007; Kufel and Grzechnik 2019). Indeed, C/D box snoRNAs possess two conserved motifs, the C and D boxes (with respective consensus sequences RUGAUGA and CUGA, in which R is any purine), as well as the less conserved C′ and D′ motifs (same sequences as C and D boxes), all of which attract...
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  3. Resource: Epigenomics of embryogenesis in turbot
    • Oscar Aramburu,
    • Belen G Pardo,
    • Ada Jimenez-Gonzalez,
    • Andrés Blanco-Hortas,
    • Daniel Macqueen,
    • Carmen Bouza,
    • and Paulino Martinez
    Genome Res. November 4, 2025 gr.280355.124; Published in Advance November 4, 2025, doi:10.1101/gr.280355.124
    ...elements have received limited attention, aside from studies exploring non-88 coding RNAs (Robledo et al., 2017; Cai et al., 2023), and recently on 89 epigenomic changes controlling immune response in response to viral and 90 bacterial mimics (Aramburu et al., 2025). The morphological processes 91...
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  4. Research: Small chromosomal regions position themselves autonomously according to their chromatin class
    • Harmen J.G. van de Werken,
    • Josien C. Haan,
    • Yana Feodorova,
    • Dominika Bijos,
    • An Weuts,
    • Koen Theunis,
    • Sjoerd J.B. Holwerda,
    • Wouter Meuleman,
    • Ludo Pagie,
    • Katharina Thanisch,
    • Parveen Kumar,
    • Heinrich Leonhardt,
    • Peter Marynen,
    • Bas van Steensel,
    • Thierry Voet,
    • Wouter de Laat,
    • Irina Solovei,
    • and Boris Joffe
    Genome Res. June 2017 27: 922-933; Published in Advance March 24, 2017, doi:10.1101/gr.213751.116
    ...remain unknown, and we can only speculate that they might be represented by such epigenetic cues as noncoding RNAs or chromatin proteins recognizing methylated DNA and posttranslational histone modifications. In accordancewith this, recent studies suggest that recognition sequences for nuclear proteins...
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